Toward an amphiphilic bilirubin: the crystal structure of a bilirubin e-isomer

A new bilirubinoid analog (1) with two methoxy beta-substituents on the lactam ring of each dipyrrinone was synthesized and examined spectroscopically. It is more soluble in CH3OH and CHCl3 than bilirubin, which is insoluble in CH3OH but soluble in CHCl3. The solubility of 1 is approximately 10 microg/mL in CH3OH (vs < or =1 microg/mL for bilirubin) and approximately 3 mg/mL in CHCl3 (vs approximately 0.6 mg/mL for bilirubin). Vapor pressure osmometry indicates that 1, like bilirubin, is monomeric in CHCl3, and NMR studies show that the most stable structure has the syn-4Z,syn-15Z configuration, with the pigment's dipyrrinones engaged in intramolecular hydrogen bonding to the propionic acid carboxyl groups. And, like bilirubin, Z,Z-1 adopts a conformation that is bent in the middle into a ridge-tile shape. For the first time, a crystal structure of a bilirubin E-isomer has been obtained. Crystallization of 1 under dim room lighting gave an X-ray quality crystal of the anti-4E,syn-15Z-(photo) isomer, in which only the Z-dipyrrinone half is engaged in intramolecular hydrogen bonding to a propionic acid. Hydrogen bonding is nearly completely disengaged in the E-dipyrrinone half; yet, the ridge-tile conformation persists.     

Methoxyl-induced fluorescence quenching in N,N′-bridged 9H-dipyrrinones and an X-ray crystal structure

Strongly fluorescent dipyrrinones can be prepared by bridging the pyrrole and lactam nitrogens with a carbonyl group, from reaction with N,N′-carbonyldiimidazole in the presence of a strong, non-nucleophilic base. The yellow, N,N′-carbonyl-bridged dipyrrinones typically have fluorescent quantum yields (φ_F) approaching 1.0. Thus, in chloroform, N,N′-bridged 9H-dipyrrinones with β-alkyl substituents: 2,3-diethyl-7,8-dimethyl has φ_F = 0.90 (λ_em = 465 nm) and 2,3-dimethyl-7,8-dimethoxy has φ_F = 0.84 (λ_em = 482 nm). In contrast, 2,3-dimethoxy-7,8-dimethyl and 2,3,7,8-tetramethoxy show red-shifted λ_em but with strongly reduced φ_F: φ_F = 0.10 (λ_em = 511 nm) and 0.08 (λ_em = 511 nm), respectively. Methoxy substituents on the lactam, but not the pyrrole ring act to quench the fluorescence and shift the emission and excitation wavelengths bathochromically. The first X-ray crystal structure of an N,N′-carbonyl-bridged dipyrrinone was obtained from 7,8-dimethoxy-2,3-dimethyl-10H-dipyrrin-1-one. Correspondence: David A. Lightner, Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020, USA.     

Strategic Synthesis of Heptacoordinated FeIII Bifunctional Complexes for Efficient Water Electrolysis

In this research, highly efficient heterogeneous bifunctional (BF) electrocatalysts (ECs) have been strategically designed by Fe coordination (C_R) complexes, [Fe₂L₂(H₂O)₂Cl₂] (C1) and [Fe₂L₂(H₂O)₂(SO₄)].2(CH₄O) (C2) where the high seven C_R number synergistically modifies the electronic environment of the Fe centre for facilitation of H₂O electrolysis. The electronic status of Fe and its adjacent atomic sites have been further modified by the replacement of −Cl⁻ in C1 by −SO₄²⁻ in C2 . Interestingly, compared to C1 , the O−S−O bridged C2 reveals superior BF activity with extremely low overpotential (η) at 10 mA cm⁻² (140 mV_OER, 62 mV_HER) and small Tafel slope (120.9 mV dec⁻¹_OER, 45.8 mV dec⁻¹_HER). Additionally, C2 also facilitates a high-performance alkaline H₂O electrolyzer with cell voltage of 1.54 V at 10 mA cm⁻² and exhibits remarkable long-term stability. Thus, exploration of the intrinsic properties of metal–organic framework (MOF)-based ECs opens up a new approach to the rational design of a wide range of molecular catalysts.     

Solution-State 2D NMR Spectroscopy of Mixtures HyperpolarizedUsing Optically Polarized Crystals

The HYPNOESYS method (Hyperpolarized NOE System), which relies on the dissolution of optically polarized crystals, has recently emerged as a promising approach to enhance the sensitivity of NMR spectroscopy in the solution state. However, HYPNOESYS is a single-shot method that is not generally compatible with multidimensional NMR. Here we show that 2D NMR spectra can be obtained from HYPNOESYS-polarized samples, using single-scan acquisition methods. The approach is illustrated with a mixture of terpene molecules and a benchtop NMR spectrometer, paving the way to a sensitive, information-rich and affordable analytical method.     

Sequence-Specific Relay Recognition of Multiple Anions: An Interplay between Proton Donors and Acceptors

Ratiometric detection of analyte is highly deserving since the technique is free from background correction. This work reports the design and synthesis of a pyridine-end oligo p-phenylenevinylene (OPV) derivative, 1 and its application in ratiometric dual-mode (both colorimetric and fluorogenic) recognition of dual anions, bisulfate (LOD=12.5 ppb) followed by fluoride (LOD=18.2 ppb) by sequence-specific relay (SPR) technique. The colorless probe turns brown with addition of bisulfate and again becomes colorless with the sequential addition of fluoride ion. In addition to such naked-eye color change, interestingly the ratiometric spectroscopic signals are reversible and evidently, the probe is reusable for several cycles. Besides, in presence of bisulfate, the protonated probe molecules, owing to their larger amphiphilic characteristics, formed self-assembled nanostructures. In addition to colorimetric and fluorescent changes, ¹H NMR titration and systematic DFT study evidently establish the underneath proton transfer mechanisms. Such reusable OPV-based chemosensor particularly with the capability of naked-eye recognition of dual anions using the SPR technique is seminal and possibly the first report in the literature.     

Mixed valent sites in biological electron transfer

Many of the active sites involved in electron transfer (ET) in biology have more than one metal and are mixed valent in at least one redox state. These include Cu(A), and the polynuclear Fe-S clusters which vary in their extent of delocalization. In this tutorial review the relative contributions to delocalization are evaluated using S K-edge X-ray absorption, magnetic circular dichroism and other spectroscopic methods. The role of intra-site delocalization in ET is considered.     

Physicochemical properties and microstructure formation of the surfactant mixtures of sodium N-(2-(n-dodecylamino)ethanoyl)-L-alaninate and SDS in aqueous solutions

Aggregation behavior of a novel anionic amphiphilic molecule, sodium N-(2-(n-dodecylamino)ethanoyl)-L-alaninate (C(12)Ala), was studied in the presence of sodium dodecyl sulfate (SDS) surfactant at different [C(12)Ala]/[SDS] molar ratios and concentrations. The viscosity of aqueous SDS solution increased in the presence of C(12)Ala surfactant. The bulk viscosity of water was found to increase upon increase of both molar ratio and total surfactant concentration. The microenvironments of the self-assemblies were investigated using the fluorescence probe technique. Fluorescence anisotropy studies indicated formation of rodlike micelles. Both dynamic light scattering and small-angle neutron scattering measurements were performed to obtain the size and shape of the microstructures. The concentration and composition dependence of the hydrodynamic diameter of the aggregates were investigated. Transmission electron micrographs revealed the presence of a hexagonal liquid crystal phase in dilute solutions of the C(12)Ala-SDS mixture. The micrographs of moderately concentrated solution, however, showed cholesteric liquid-crystal structures with fingerprint-like texture. Temperature-dependent phase behavior of the self-assemblies was studied by use of the fluorescence probe technique.     

Femtosecond solvation dynamics in different regions of a bile salt aggregate: excitation wavelength dependence

Solvation dynamics of coumarin 480 (C480) in the secondary aggregate of a bile salt (sodium deoxycholate, NaDC) is studied using femtosecond up-conversion. The secondary aggregate resembles a long (approximately 40 A) hollow cylinder with a central water-filled tunnel. Different regions of the aggregate are probed by variation of the excitation wavelength (lambdaex) from 375 to 435 nm. The emission maximum of C480 displays an 8 nm red shift as the lambdaex increases from 345 to 435 nm. The 8 nm red edge excitation shift (REES) suggests that the probe (C480) is distributed over regions of varied polarity. Excitation at a short wavelength (375 nm) preferentially selects the probe molecule in the buried locations and exhibits slow dynamics with a major (84%) slow component (3500 ps) and a small (16%) contribution of the ultrafast component (2.5 ps). Excitation at lambdaex=435 nm (red end) corresponds to the exposed sites where solvation dynamics is very fast with a major (73%) ultrafast component (相似文献   

Fragment-based de novo ligand design by multiobjective evolutionary optimization

GANDI (Genetic Algorithm-based de Novo Design of Inhibitors) is a computational tool for automatic fragment-based design of molecules within a protein binding site of known structure. A genetic algorithm and a tabu search act in concert to join predocked fragments with a user-supplied list of fragments. A novel feature of GANDI is the simultaneous optimization of force field energy and a term enforcing 2D-similarity to known inhibitor(s) or 3D-overlap to known binding mode(s). Scaffold hopping can be promoted by tuning the relative weights of these terms. The performance of GANDI is tested on cyclin-dependent kinase 2 (CDK2) using a library of about 14 000 fragments and the binding mode of a known oxindole inhibitor to bias the design. Top ranking GANDI molecules are involved in one to three hydrogen bonds with the backbone polar groups in the hinge region of CDK2, an interaction pattern observed in potent kinase inhibitors. Notably, a GANDI molecule with very favorable predicted binding affinity shares a 2-N-phenyl-1,3-thiazole-2,4-diamine moiety with a known nanomolar inhibitor of CDK2. Importantly, molecules with a favorable GANDI score are synthetic accessible. In fact, eight of the 1809 molecules designed by GANDI for CDK2 are found in the ZINC database of commercially available compounds which also contains about 600 compounds with identical scaffolds as those in the top ranking GANDI molecules.