Diffusion in aqueous copper sulfate and copper sulfate-sulfuric acid solutions

Diffusion coefficients of copper sulfate-water and copper sulfate-sulfuric acid-water solutions have been determined at 25°C using conductimetric and diaphragm-cell techniques. The ternary diffusion measurements indicate that diffusion of sulfuric acid can produce large counterflows of copper sulfate and vice versa. If diffusion of copper sulfate in aqueous sulfuric acid solutions is treated as a binary process, the measured apparent diffusivities of copper sulfate can be 1 to 8% lower than the salt's true diffusivity. Equations are developed to predict transport coefficients from the concentrations and mobilities of the diffusing species.     

Rapid synthesis of acyl transfer auxiliaries for cysteine-free native glycopeptide ligation

[reaction: see text] Rapid, facile routes to the TFA-cleavable 4,5,6-trimethoxy-2-mercaptobenzyl and 1-(2,4-dimethoxyphenyl)-2-mercaptoethyl classes of auxiliaries for cysteine-free native chemical ligation are described. Rapid synthesis, coupled with mild cleavage conditions will undoubtedly broaden the utility of such auxiliaries, particularly where chemically fragile peptide modifications such as glycosylation are present.     

Theoretical investigations into the intermediacy of chlorinated vinylcobalamins in the reductive dehalogenation of chlorinated ethylenes

The reductive dehalogenation of perchloroethylene and trichloroethylene by vitamin B(12) produces approximately 95% (Z)-dichloroethylene (DCE) and small amounts of (E)-DCE and 1,1-DCE, which are further reduced to ethylene and ethane. Chloroacetylene and acetylene have been detected as intermediates, but not dichloroacetylene. Organocobalamins (RCbls) have been proposed to be intermediates in this process. Density functional theory based approaches were employed to investigate the properties of chlorinated vinylcobalamins and chlorinated vinyl radicals. They reveal that all vinyl radicals studied have reduction potentials more positive (E degrees >or= -0.49) than that of the Co(II)/Co(I) couple of B(12) (E degrees = -0.61 V), indicating that any (chlorinated) vinyl radicals formed in the reductive dehalogenation process should be reduced to the corresponding anions by cob(I)alamin in competition with their combination with Co(II) to yield the corresponding vinylcobalamins. The computed Co-C homolytic bond dissociation enthalpies (BDEs) of the latter complexes range from 33.4 to 45.8 kcal/mol. The substituent effects on the BDEs are affected by the stabilities of the vinyl radicals as well as steric interactions between (Z)-chloro substituents and the corrin ring. The calculated E degrees values of the cobalamin models were within approximately 200 mV of one another since electron attachment is to a corrin ring pi-orbital, whose energy is relatively unaffected by chloride substitution of the vinyl ligand, and all were >500 mV more negative than that of the Co(II)/Co(I) couple of B(12). Reduction of the base-off forms of vinyl- and chlorovinylcobalamin models also involves the corrin pi* orbital, but reduction of the base-off dichlorovinyl- and trichlorovinylcobalamin models occurs with electron attachment to the sigma(Co)(-)(C*) orbital, yielding calculated E degrees values more positive than that of the calculated Co(II)/Co(I) couple of B(12). Thus, cob(I)alamin is expected to reduce these base-off vinyl-Cbls. Heterolytic cleavage of the Co-C bonds is much more favorable than homolysis (>21 kcal/mol) and is significantly more exergonic when coupled to chloride elimination.     

Experimental investigation of the molecular ions of the xylenes

A mass spectrometric method of distinguishing between molecular ions of the three isomeric xylenes (dimethylbenzenes) was sought, in light of recent findigs that photoexcited ions could be distinguished via measurements of kinetic energy release accompanying expulsion of a methyl radical. Provided the molecular ions are formed with low internal energies, reproducible differences were found between relative intensities of collision induced reactions of higher critical energies, than for methyl expulsion. These differences exist both for collision energies in the kilovolt range (double focusing mass spectrometers) and in the range of a few tens of volts (triple quadrupole instrument). Though statistically significant, these differences were small. The mechanism of isomerization and fragmentation was investigated via isotopic labelling studies and measurements of kinetic energy release. Most of the present findings can be rationalized in terms of the most recent version of established mechanisms for reactions of ionized methylbenzenes.     

An SCF-MS-Xα study of the bonding and nuclear quadrupole coupling in diatomic halogens and interhalogens in the ground X Σ and B Π 0 excited states

SCF-MS-Xα calculations of the electronic structure of diatomic halogens and interhalogens XY (X = I, Br, Cl; Y = I, Br, Cl, F) have been used to investigate the bonding and nuclear quadrupole coupling in these molecules. Calculations have been carried out for the ground X ¹ Σ electronic state, and for the excited B ³ Π₀ state in the case of I₂, Br₂, ICl and IBr. Good agreement (to within 10% in most cases) is obtained between the calculated and observed nuclear quadrupole coupling constants for the molecules in the ground state. For the excited state the agreement is not as good, but the calculation does reproduce the observed decrease in the coupling constants to less than one quarter of their ground state values, and analysis of the contributions to the field gradients clearly shows the reasons for this. The electric dipole moments and electric quadrupole moments of the molecules have also been calculated. However, these prove to be much more strongly dependent on the variables used in the calculation (atomic sphere radii, inclusion of d orbitals). The results of the calculations have also been used to test some of the assumptions made in the Townes and Dailey method of analysis of nuclear quadrupole coupling data.     

Molecular recognition and conductance in crown ethers

Crown ethers have the remarkable property of recognizing and binding specific metal cations in complex mixtures. We propose to combine molecular recognition with molecular electric conductance. The question we address is: can the event of binding a cation be sensed by a change in conductance? Specifically, we study a short molecular wire (MW) containing a crown-6 molecule connected via sulfur atoms to two gold atomic wires acting as metallic leads. Upon binding a cation, the density of states of the system is only slightly affected. This reflects the fact that the cation binding is largely electrostatic in nature and is accompanied by little electronic reorganization. Yet, the cationic binding does significantly lower conductance. We also identify strong interference affecting the conductance. A striking feature is the insensitivity of conductance to the type of ligand with the exception of the proton.     

The Coulomb hole in the 23S state of the helium isoelectronic sequence

The pair distribution functions evaluated for the 2³S state of the helium isoelectronic sequence from the Hart and Herzberg correlated wave functions and those corresponding to the Hartree-Fock approximation are used to determine the shape of the corresponding Coulomb holes. As a consequence of a discontinuity in the Hartree-Fock solution between He and Li⁺, the Coulomb hole has a different shape for He than for Li⁺ and the other isoelectronic ions.     

Conformational analysis—II: A lanthanide-induced shift nmr and theoretical study of bicyclo [3.1.0] hexan-3-one and adamantanone

The solution conformation of bicyclo [3.1.0] hexan-3-one has been obtained by the use of the shifts induced in its ¹H and ¹³C NMR by Yb(fod)₃. Refinement of the angle of pucker, ∝, of the 5-membered ring indicates that the molecule adopts a flattened boat conformation with ∝ = 195°. This prediction is supported by ab initio, STO-3G, calculations on the isolated molecule. Use of a two- or four-site model for lanthanide-substrate complexing adequately reproduces the experimental data whereas a one-site binding model is unsatisfactory. The importance of multi-site binding is further emphasised by results for the C_2v-symmetric ketone, adamantanone, where only a four-site model gives satisfactory agreement between observed and calculated lanthanide-induced shifts.     

Preparation and X-ray crystal structures of mixed ligand complexes containing the S3N ligand

Reaction of Hg(S₇N)₂ with cis- PtCl₂(PR₃)₂ (PR₃ = PPh₃, PPh₂Me, PPHMe₂, PEt₃) in the presence of Na[PF₆] gives [Pt(S₃N)(PR₃)₂][PF₆] in 32–46% yield. The complexes have been characterized by IR, NMR and microanalyses. The X-ray crystal structures of two examples (PR₃ = PPh₂Me and PEt₃) show that the S₃N⁻ ligand coordinates in a bidentate fashion via two sulphur atoms.     

Theoretical studies of the cross-linking mechanisms between cytosine and tyrosine

DNA-protein cross-linking is one of the many DNA lesions mediated by hydroxyl radicals, the most damaging among the reactive oxygen species in biological systems. Density functional theory methods are employed to investigate the complex reaction mechanisms of the formation of cytosine-tyrosine cross-links as observed in gamma-irradiated aqueous solutions of cytosine and tyrosine, as well as in gamma-irradiated nucleohistone. The majority of the radical addition mechanisms considered are found to have significant barriers and therefore to be thermodynamically unfavorable for the formation of the initial cross-linked product. Our calculated reaction potential energy surfaces suggest that a feasible complete mechanism consists of radical combination forming the initial cross-linked product, a hydrogen shuffle within the initial cross-linked product, and an acid-catalyzed dehydration reaction. Water and hydrogen-bonding interactions are suggested to play a key role in catalyzing the hydrogen-transfer step of the reaction.