Chalcogenide derivatives of imidotin cage complexes

Reaction of the secocubane [Sn3(mu2-NHtBu)2(mu2-NtBu)(mu3-NtBu)] (1) with dibutylmagnesium produces the heterobimetallic cubane [Sn3Mg(mu3-NtBu)4] (4) which forms the monochalcogenide complexes of general formula [ESn3Mg(mu3-NtBu)4] (5a, E = Se; 5b, E = Te) upon reaction with elemental chalcogens in THF. By contrast, the reaction of the anionic lithiated cubane [Sn3Li(mu3-NtBu)4]- with the appropriate quantity of selenium or tellurium leads to the sequential chalcogenation of each of the three Sn(II) centres. Pure samples of the mono- or dichalcogenides are, however, best obtained by stoichiometric redistribution reactions of [Sn3Li(mu3-NtBu)4]- and the trichalcogenides [E3Sn3Li(mu3-NtBu)4]- (E = Se, Te). These reactions are conveniently monitored by using 119Sn NMR spectroscopy. The anion [Sn3Li(mu3-NtBu)4]- also acts as an effective chalcogen-transfer reagent in reactions of selenium with the neutral cubane [{Snmu3-N(dipp)}4] (8) (dipp = 2,6-diisopropylphenyl) to give the dimer [(thf)Sn{mu-N(dipp)}2Sn(mu-Se)2Sn{mu-N(dipp)}2Sn(thf)] (9), a transformation that results in cleavage of the Sn4N4 cubane into four-membered Sn2N2 rings. The X-ray structures of 4, 5a, 5b, [Sn3Li(thf)(mu3-NtBu)4(mu3-Se)(mu2-Li)(thf)]2 (6a), [TeSn3Li(mu3-NtBu)4][Li(thf)4] (6b), [Te2Sn3Li(mu3-NtBu)4][Li([12]crown-4)2] (7b') and 9 are presented. The fluxional behaviour of cubic imidotin chalcogenides and the correlation between NMR coupling constants and tin-chalcogen bond lengths are also discussed.     

Muonium formation and the “missing fraction” in vapors

The vapor phase fractional polarizations of positive muons thermalizing as the muonium atom (P _M) and in diamagnetic environments (P _D) has been measured in H₂O, CH₃OH, C₆H₁₄, C₆H₁₂, CCl₄, CHCl₃, CH₂Cl₂ and TMS, in order to compare with the corresponding fractions measured in the condensed phases. There is a marked contrast in every case, with the vapor phase results being largely understandable in terms of a charge exchange/hot atom model. Unlike the situation in the corresponding liquids, there is no permanent lost fraction in the vapor phase in the limit of even moderately high pressures (1 atm); at lower pressures, depolarization is due to hyperfine mixing and is believed to be well understood. For vapor phase CH₃OH, C₆H₁₄, C₆H₁₂, and TMS therelative fractions are found to be pressure dependent, suggesting the importance of termolecular hot atom (or ion) reactions in the slowing down process. For vapor phase H₂O and the chloromethanes, the relative fractions are pressure independent. For CCl₄,P _M=P _D0.5 in the vapor phase vs.P _D=1.0 in the liquid phase; fast thermal reactions of Mu likely contribute significantly to this difference in the liquid phase. For H₂O,P _M 0.9 andP _D0.1 in the vapor phase vs.P _D 0.6 andP _M0.2 in the liquid phase. Water appears to be the one unequivocal case where the basic charge exchange/hot atom model is inappropriate in the condensed phase, suggesting, therefore, that radiation induced spur effects play a major role.     

Ab initio stochastic optimization of conformational and many-body degrees of freedom

Moderate to large size molecules in solution have complex energy surfaces due to intramolecular (conformational) and intermolecular (many-body) interactions. The first principles Monte Carlo (FPMC) method, previously shown to effectively locate minimum-energy structures for systems with only many-body complexity, has been extended to address conformational flexibility by adding three new Monte Carlo move types. The primary advantage of the FPMC method is the ability to efficiently locate minimum energy structures of molecules with conformational flexibility in the presence of explicit solvent molecules using highly accurate quantum chemical calculations. The additions to FPMC were validated by studying conformers of glycerol, glyceraldehyde, and a large humic acid monomer unit. The structure of glyceraldehyde in the presence of one and two water molecules was also explored to demonstrate the power of FPMC to study systems with both conformational and many-body degrees of freedom.     

DNA-templated three-branched nanostructures for nanoelectronic devices

Three-branched DNA molecules have been designed and assembled from oligonucleotide components. These nucleic acid constructs contain double- and single-stranded regions that control the hybridization behavior of the assembly. Specific localization of a single streptavidin molecule at the center of the DNA complex has been investigated as a model system for the directed placement of nanostructures. Highly selective silver and copper metallization of the DNA template has also been characterized. Specific hybridization of these DNA complexes to oligonucleotide-coupled nanostructures followed by metallization should provide a bottom-up self-assembly route for the fabrication and characterization of discrete three-terminal nanodevices.     

Synthesis of polystyrene/poly[2-(dimethylamino)ethyl methacrylate-stat-ethylene glycol dimethacrylate] core-shell latex particles by seeded emulsion polymerization and their application as stimulus-responsive particulate emulsifiers for oil-in-water emulsions

Surfactant-stabilized polystyrene (PS) latex particles with a mean hydrodynamic diameter of 155 nm were prepared by aqueous emulsion polymerization using 2,2'-azobis(2-amidinopropane) hydrochloride as a cationic radical initiator. Seeded aqueous emulsion copolymerizations of 2-(dimethylamino)ethyl methacrylate (DMA) and ethylene glycol dimethacrylate (EGDMA) were conducted in the presence of these PS particles to produce two batches of colloidally stable core-shell latex particles, in which the shell comprised a cross-linked P(DMA-stat-EGDMA) overlayer. Both the PS and PS/P(DMA-stat-EGDMA) latexes were characterized in terms of their particle size, morphology, and composition using dynamic light scattering, electron microscopy, and FT-IR spectroscopy, respectively. Using the PS/P(DMA-stat-EGDMA) latex particles as a pH-responsive particulate ('Pickering'-type) emulsifier, polydisperse n-dodecane-in-water emulsions were prepared at pH 8 that could be partially broken (demulsified) on lowering the solution pH to 3. These emulsions were characterized in terms of their emulsion type, mean droplet diameter, and morphology using electrical conductivity and Mastersizer measurements, optical microscopy, and scanning electron microscopy (using critical point drying for sample preparation).     

Application of time-resolved infrared spectroscopy to electronic structure in metal-to-ligand charge-transfer excited states

Infrared data in the nu(CO) region (1800-2150 cm(-1), in acetonitrile at 298 K) are reported for the ground (nu(gs)) and polypyridyl-based, metal-to-ligand charge-transfer (MLCT) excited (nu(es)) states of cis-[Os(pp)2(CO)(L)](n)(+) (pp = 1,10-phenanthroline (phen) or 2,2'-bipyridine (bpy); L = PPh3, CH(3)CN, pyridine, Cl, or H) and fac-[Re(pp)(CO)3(4-Etpy)](+) (pp = phen, bpy, 4,4'-(CH3)2bpy, 4,4'-(CH3O)2bpy, or 4,4'-(CO2Et)2bpy; 4-Etpy = 4-ethylpyridine). Systematic variations in nu(gs), nu(es), and Delta(nu) (Delta(nu) = nu(es) - nu(gs)) are observed with the excited-to-ground-state energy gap (E(0)) derived by a Franck-Condon analysis of emission spectra. These variations can be explained qualitatively by invoking a series of electronic interactions. Variations in dpi(M)-pi(CO) back-bonding are important in the ground state. In the excited state, the important interactions are (1) loss of back-bonding and sigma(M-CO) bond polarization, (2) pi(pp*-)-pi(CO) mixing, which provides the orbital basis for mixing pi(CO)- and pi(4,4'-X(2)bpy)-based MLCT excited states, and (3) dpi(M)-pi(pp) mixing, which provides the orbital basis for mixing pipi- and pi(4,4'-X(2)bpy*-)-based MLCT states. The results of density functional theory (DFT) calculations on the ground and excited states of fac-[Re(I)(bpy)(CO)3(4-Etpy)](+) provide assignments for the nu(CO) modes in the MLCT excited state. They also support the importance of pi(4,4'-X2bpy*-)-pi(CO) mixing, provide an explanation for the relative intensities of the A'(2) and A' ' excited-state bands, and provide an explanation for the large excited-to-ground-state nu(CO) shift for the A'(2) mode and its relative insensitivity to variations in X.     

Enzymes in Organic Synthesis: Application to the Problems of Carbohydrate Recognition (Part 1)

Carbohydrates on cell surfaces are information molecules. Although only seven or eight monosaccharides are commonly used as building blocks in mammalian systems, the multifunctionality of these monomers can lead to the assembly of an immense variety of complex structures. Millions of different tetrasaccharide structures, for example, can be constructed from this small number of building blocks, if branching, the stereochemistry of glycosidic linkages, and the modification of hydroxyl and amino groups are taken into consideration. Oligosaccharides therefore represent an effective class of biomolecules that code for a vast amount of information required in various biological recognition processes, such as intercellular communication, signal transduction, cell adhesion, infection, cell differentiation, development and metastasis. The pace of development of pharmaceuticals based on carbohydrates has, however, been slower than that based on other classes of biomolecules. Part of the reason is the lack of technologies for the study of complex carbohydrates. There is no method to amplify oligosaccharides for sequence analysis. There is no machine available for automated synthesis of oligosaccharides. In addition, the possibly poor bioavailability and difficulties in the large-scale synthesis of carbohydrates have undoubtedly contributed to this slow pace. The enzymatic and chemoenzymatic methods, especially those based on aldolases and glycosyltransferases, described here appear to be useful for the synthesis of mono- and oligosaccaharides and related molecules. Further advances in glycobiology will probably lead to the development of new technologies for the study of carbohydrate recognition and for the synthesis of bioactive carbohydrates and mimetics to control the recognition processes.     

Structure and mechanical properties of poly(l-lactide)/layered silicate nanocomposites

Poly(ε-caprolactone) (PCL) masterbatches with the intercalated and the exfoliated morphology were prepared by ring opening polymerization of ε-caprolactone in the presence of organomodified montmorillonite (MMT) Cloisite 30B. Poly(l-lactide) (PLLA) nanocomposites with Cloisite 30B or PCL masterbatches were prepared by melt blending. The effects of the silicate type, MMT content and the nanocomposite morphology on thermal and mechanical properties of PLLA nanocomposites were examined. The montmorillonite particles in PLLA/Cloisite 30B and PLLA/intercalated masterbatch nanocomposites were intercalated. In contrary to expectations, the exfoliated silicate layers of exfoliated masterbatch were not transferred into the PLLA matrix. Due to a low miscibility of PCL and PLLA, MMT remained in the phase-separated masterbatch domains. The stress-strain characteristics of PLLA nanocomposites, Young modulus E, yield stress σ_y and yield strain ε_y, decreased with increasing MMT concentration, which is associated with the increase in PCL content. The expected stiffening effect of MMT was low due to a low aspect ratio of its particles and was obscured by both plastifying effects of PCL and low PLLA crystallinity. Interestingly, in contrast to the neat PLLA, ductility was enhanced in all PLLA/Cloisite 30B materials and in PLLA/masterbatch nanocomposites with low MMT concentrations.     

Ab initio characterization of several states of nitroxylium (NO). Comparison of fragmentation energies of nitroxylium,nitroxyl (NO3), and nitrate

Ab initio calculations have been performed at the self-consistent field (HF) level, and its perturbative extensions up to fourth-order (MPn), for several electronic states of nitroxylium (NO) as well as for a large number of reference species. Geometries are optimized at the HF/DZ and HF/DZP levels (double zeta and double zeta plus polarization bases). The ground state is found to be the D_3h ¹A₁′ state, with the C_2v ¹A₁ (closed Y) state higher by 0.94 eV. The relationship between adding electrons or oxygen atoms to NO⁺ and NO is explored, especially in relation to fragmentation energies of NO (q = 0 or 1). A comparison is drawn between NO and two isoelectronic species, CO₃ and C(CH₂)₃, where no surprises are found.     

Gene expression analysis for high throughput screening applications

To meet growing needs for high throughput gene expression profiling, we established a new automated high throughput TaqMan RT-PCR method for quantitative mRNA expression analysis. In this method, the Allegro( trade mark ) (Zymark) system conducts all sample tracking and liquid handling steps, and ABI PRISM 7900 HT (Applied Biosystems) is used to conduct real-time determination of the C(t) value when amplification of PCR products is first detected and accumulation of inhibitory PCR products is unlikely to occur. The ABI PRISM 7900 HT Sequence Detection System features a real-time PCR instrument with 384-well-plate compatibility and robotic loading, and continuous wavelength detection, which enables the use of multiple fluorophores in a single reaction. The Allegro System offers an assembly line approach with a modular design that allows reconfiguration of the components to accommodate variations in the assay flow. In the present study, we have established and validated a new automated High Throughput (HT) TaqMan RT-PCR- based method for quantitative mRNA expression analysis. The data demonstrate that HT-Taqman PCR is a powerful tool that can be used for measuring low concentrations of mRNA, and is highly accurate, reproducible, and amenable to high throughput analysis. Results suggest that HT-TaqMan is a reliable method for the quantification of low-expression genes and a powerful tool with HT capability for target identification/validation, structure-activity relationship (SAR) study, compound selection for efficacy studies, and biomarker identification in drug discovery and development.