Binding of an inhibitor of the p53/MDM2 interaction to MDM2

The mode of action of the secondary metabolite chlorofusin, which antagonises the interaction between p53 and MDM2, involves direct binding to the N-terminal domain of MDM2.     

Interaction of atrazine with Laurentian fulvic acid: binding and hydrolysis

Ultrafiltration fractionation and liquid chromatography (LC) have been applied to the study of the binding and hydrolysis of the polar herbicide atrazine on a stoichiometrically well characterized fulvic acid. Binding requires extensive carboxylate site protonation but the binding sites represent a very small fraction of total carboxylate. The data show that binding of atrazine is not competitive with binding of the hydrolytic product hydroxyatrazine. However, smaller molecular weight fractions of the fulvic acid mixture compete with atrazine for sites on the larger molecular weight fraction. Binding equilibrium is not rapid. A model of binding involving hydrogen bonding and/or charge-transfer complexing to specific sites created dynamically by the conformational equilibria of the higher molecular weight polymeric fulvic acid fractions is proposed as the best accommodation of the variety of observed facts.     

The role of acidic residues and of sodium ion adduction on the gas-phase H/D exchange of peptides and peptide dimers

Gas-phase H/D exchange is widely used for characterizing the structure of ions. However, many structural parameters that affect the rate of H/D exchange are poorly understood, which complicates the interpretation of experimental data. Here, the effects of sodium ion adduction on the rate of H/D exchange with D₂O for a series of peptides and peptide dimers with varying numbers of acidic residues are described. The maximum number of sodium ion adducts that can be accommodated by the peptides and peptide dimers in this study is N + 1, where N is the number of free carboxylic acid groups. The formation of methyl-esters at all carboxylic acid groups, or the replacement of all the acidic hydrogens with sodium ions, effectively shuts down H/D exchange with D₂O. In contrast, both the rate and the extent of H/D exchange with D₂O are increased for most of the peptides and peptide dimers by the adduction of an intermediate number of sodium ions. These results are consistent with the H/D exchange occurring via a salt-bridge mechanism and show that the presence of two carboxylic acid groups is much better than one. The results with peptide dimers also indicate that surface accessibility may not be a dominant factor in the extent of H/D exchange for these ions.     

Direct observation of the transformation of ludwigite to orthopinakiolite

Crystals with the composition Mg_1.5Mn_1.5BO₅ prepared at 1300°C in sealed platinum tubes were studied by high-resolution electron microscopy. The crystals were found to possess the ludwigite structure with very few inherent planar defects. After heating in the electron beam the electron diffraction patterns and electron micrographs showed that the ludwigite structure had rearranged to the orthopinakiolite structure. Two possible mechanisms for such a transformation have been described.     

Hydrolysis of alkyl cyanoacrylate and ethoxycarbonylpropenoylphosphonate polymers

The polymers of ethyl α-cyanopropenoate (widely known as cyanoacrylate) and dimethyl (α-ethoxycarbonyl)propenoylphosphonate have been hydrolyzed and their rates of degradation to formaldehyde have been compared. The phosphate polymer produced much less formaldehyde than the cyanopropenoate polymer as required for an improved surgical adhesive. In a comparative study, the rate of aqueous hydrolysis of a high molecular weight cyanoacrylate polymer differed from a previous report. The nature and the hydrolytic properties of the end groups in the two types of polymer are discussed.     

Investigative proteomics: identification of an unknown plant virus from infected plants using mass spectrometry

We describe the identification of a previously uncharacterized plant virus that is capable of infecting Nicotiana spp. and Arabidopsis thaliana. Protein extracts were first prepared from leaf tissue of uninfected tobacco plants, and the proteins were visualized with two-dimensional electrophoresis (2-DE). Matching gels were then run using protein extracts of a tobacco plant infected with tobacco mosaic virus (TMV). After visual comparison, the proteins spots that were differentially expressed in infected plant tissues were cut from the gels and analyzed by high performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS). Tandem mass spectrometry data of individual peptides was searched with SEQUEST. Using this approach we demonstrated a successful proof-of-concept experiment by identifying TMV proteins present in the total protein extract. The same procedure was then applied to tobacco plants infected with a laboratory viral isolate of unknown identity. Several of the differentially expressed protein spots were identified as proteins of potato virus X (PVX), thus successfully identifying the causative agent of the uncharacterized viral infection. We believe this demonstrates that HPLC-MS/MS can be used to successfully characterize unknown viruses in infected plants.     

Nitrofuran antibiotic residues in pork: The FoodBRAND retail survey

Use of nitrofuran drugs in food-producing animals has been prohibited within the EU because they may represent a public health risk. Monitoring compliance with the ban has focused on the detection of protein-bound nitrofuran metabolites which, in contrast to the parent compounds, are stable and persist in animal tissues. As part of the “FoodBRAND” project, an extensive survey of pork was undertaken across 15 European countries. Samples (n = 1500) purchased at retail outlets were analysed for the nitrofuran metabolites AOZ, AMOZ, AHD and SEM using LC–MS/MS determination of nitrobenzaldehyde derivatives. Limits of quantification for the method were 0.1 μg/kg (AOZ, AMOZ), 0.2 μg/kg (SEM) and 0.5 μg/kg (AHD). Of the 1500 samples tested, measurable residues of nitrofuran metabolites were confirmed in 12 samples (0.8% incidence overall) of which 10 samples were purchased in Portugal (AOZ, 0.3 μg/kg; AMOZ, 0.2–0.6 μg/kg) and one sample each in Italy (AMOZ, 1.0 μg/kg) and Greece (AOZ, 3.0 μg/kg).     

Elution order in gas chromatography

The retention behavior of a heterogeneous group of solutes has been examined on seven different stationary phases under isothermal and temperature-programmed conditions. Both ΔH_v (enthalpy of solute vaporization from the stationary phase) and ΔS_v (entropy of solute vaporization from the stationary phase) values were determined for each solute – stationary phase combination under isothermal conditions. Both program rate and carrier gas velocity were shown to affect solute elution order. Unless these and other experimental factors discussed are controlled, column equivalency studies based on solute elution order have dubious value.