The enantiospecific,stereospecific total synthesis of the ring-A oxygenated sarpagine indole alkaloids (+)-majvinine, (+)-10-methoxyaffinisine,and (+)-N(a)-methylsarpagine,as well as the total synthesis of the alstonia bisindole alkaloid macralstonidine

The first stereospecific, enantiospecific total synthesis of the ring-A oxygenated sarpagine indole alkaloids (+)-N(a)-methylsarpagine (8), (+)-majvinine (14), and (+)-10-methoxyaffinisine (49), as well as the first total synthesis of the Alstonia bisindole alkaloid macralstonidine (9), has been accomplished. This approach employed the Sch?llkopf chiral auxiliary for the stereospecific construction of the desired d-(+)-tryptophan unit required for the asymmetric Pictet-Spengler reaction. In addition, the strategy was doubly convergent for the enolate-mediated Pd(0) coupling process and the asymmetric Pictet-Spengler reaction can be employed to synthesize both macroline (2) and N(a)-methylsarpagine (8), the coupling of which provides macralstonidine (9). This approach to ring-A substituted alkoxyindole alkaloids should find wide application for the synthesis of other alkaloids for it is stereospecific and either enantiomer can be prepared with ease.     

Synthesis and resolution of (R,R)-(+/-)-1,1,4,7,10,10-hexaphenyl-1,10-diarsa-4,7-diphosphadecane: new ligand for the stereoselective self-assembly of dicopper(I), disilver(I), and digold(I) helicates

Diphenylvinylarsine oxide reacts with 1,2-bis(phenylphosphino)ethane in the presence of potassium tert-butoxide to give the anti-Markovnikov product (R,R)-(+/-)/(R,S)-1,1,4,7,10,10-hexaphenyl-1,10-diarsa-4,7-diphosphadecane dioxide-1AsO,10AsO, which, upon reduction with HSiCl(3)/NEt(3) in boiling acetonitrile, affords in 84% overall yield the di(tertiary arsine)-di(tertiary phosphine) (R,R)-(+/-)/(R,S)-diphars. After separation of the diastereomers by fractional crystallization, the (R,R)-(+/-) form of the ligand was resolved by metal complexation with (+)-di(mu-chloro)bis[(R)-1-[1-(dimethylamino)ethyl]-2-phenyl-C(2),N]dipalladium(II): (R,R)-diphars, mp 87-88 degrees C, has [alpha](D)(21) = -18.6 (c 1.0, CH(2)Cl(2)); (S,S)-diphars has [alpha](D)(21) = +18.4 (c 1.0, CH(2)Cl(2)). The crystal and molecular structures of the complexes (M)-[M(2)[(R,R)-diphars](2)](PF(6))(2) (M = Cu, Ag, Au) have been determined: [M-(S(Cu),S(Cu))]-(-)-[Cu(2)[(R,R)-diphars](2)](PF(6))(2), orthorhombic, P2(1)2(1)2(1) (No. 19), a = 16.084(3) A, b = 18.376(3) A, c = 29.149(6) A, Z = 4; [M-(S(Ag),S(Ag))]-(+)-[Ag(2)[(R,R)-diphars](2)](PF(6))(2), triclinic, P1, a = 12.487(2) A, b = 12.695(4) A, c = 27.243(4) A, alpha = 92.06 degrees, beta = 95.19 degrees, gamma = 98.23 degrees, Z = 2; [M-(S(Au),S(Au))]-(-)-[Au(2)[(R,R)-diphars](2)](PF(6))(2), orthorhombic, P2(1)2(1)2(1) (No. 19), a = 16.199(4) A, b = 18.373(4) A, c = 29.347(2) A, Z = 4. In the copper(I) and gold(I) helicates, each ligand strand completes 1.5 turns of an M helix in a parallel arrangement about the two chiral MAs(2)P(2) stereocenters of S configuration. The unit cell of the silver(I) complex contains one molecule each of the parallel helicate of M configuration and the conformationally related double alpha-helix of M configuration in which each ligand strand completes 0.5 turns of an M helix about two metal stereocenters of S configuration. Energy minimization calculations of the three structures with use of the program SPARTAN 5.0 gave results that were in close agreement with the core structures observed.     

Identification of ligands for RNA targets via structure-based virtual screening: HIV-1 TAR

Binding of the Tat protein to TAR RNA is necessary for viral replication of HIV-1. We screened the Available Chemicals Directory (ACD) to identify ligands to bind to a TAR RNA structure using a four-step docking procedure: rigid docking first, followed by three steps of flexible docking using a pseudobrownian Monte Carlo minimization in torsion angle space with progressively more detailed conformational sampling on a progressively smaller list of top-ranking compounds. To validate the procedure, we successfully docked ligands for five RNA complexes of known structure. For ranking ligands according to binding avidity, an empirical binding free energy function was developed which accounts, in particular, for solvation, isomerization free energy, and changes in conformational entropy. System-specific parameters for the function were derived on a training set of RNA/ligand complexes with known structure and affinity. To validate the free energy function, we screened the entire ACD for ligands for an RNA aptamer which binds l-arginine tightly. The native ligand ranked 17 out of ca. 153,000 compounds screened, i.e., the procedure is able to filter out >99.98% of the database and still retain the native ligand. Screening of the ACD for TAR ligands yielded a high rank for all known TAR ligands contained in the ACD and suggested several other potential TAR ligands. Eight of the highest ranking compounds not previously known to be ligands were assayed for inhibition of the Tat-TAR interaction, and two exhibited a CD₅₀ of ca. 1 M.     

Lcao-Xα calculations of rotational energy barriers—prototypes of chemical reactions

The LCAO -X α method is used to compute the X α rotational barrier for ethane both in the rigid-rotor approximation and for optimized staggered and eclipsed geometries. The problem of how to pick points and weights in three dimensions for fitting the nonanalytic exchange and correlation functionals of local density-functional theory is examined; a variational weighting procedure is developed which greatly reduces the size of errors due to the 3-D grid as compared to simple volume-element weighting. The accuracy of the X α results for the optimized geometries and the barrier height of ethane is found to be comparable to that of large-basis Hartree–Fock calculations.     

Characterization of internal surface reversed-phase silica supports for liquid chromatography

Internal surface reversed-phase (ISRP) supports synthesized from commercially available porous silica particles with a variety of nominal pore diameters and specific surface areas are characterized with regard to physical and chromatographic properties. Bonded phase coverage, pore size, capacity and efficiency measurements are made upon the various ISRP supports in order to evaluate the effect that the physical properties of silica have upon the chromatographic performance of ISRP packings. In addition, various models that describe the pore structure of silica supports are discussed.     

Analysis of inorganic anions by electrostatic ion chromatography using zwitterionic/cationic mixed micelles as the stationary phase

The inability to separate fluoride, phosphate and sulfate by electrostatic ion chromatography (EIC) was overcome by using an ODS silica column coated with mixed zwitterionic-cationic surfactants as the stationary phase. The best results were obtained using the zwitterionic surfactant, 3-(N,N-dimethylmyristylammonium)-propanesulfonate (C19H41NO3S), and the cationic surfactant, myristyltrimethylammonium, CH3(CH2)13N+(CH3)3, in a 10:1 molar ratio in the column coating solution. With a dilute solution of sodium tetraborate as the eluent the model analyte anions were completely separated in the following elution order: F, HPO42-, SO42-, Cl-, NO2-, Br-, NO3-. The very early elution of phosphate and sulfate is most unusual and is unique to this system. Detection limits better than 1.1 x 10(-4) mM and linear calibration plots up to 7.0 mM were obtained with a suppressed conductivity system.     

Rotational equilibria in 2-aryl-n-propanols, 2-aryl-n-propyl methyl ethers and 2-aryl-n-propyl acetates. Trends consistent with a CH---O hydrogen bond

An ¹H-nmr study of rotational isomerism in the title compounds reveals an increasing population of ?auche aryl/OMe and gauche aryl/OCOMe conformations as electron donor groups on the aromatic ring are replaced by electron withdrawing groups.     

Generalized hybrid orbitals

A new set of generalized hybrid atomic orbitals is proposed for use in the theory of molecular electronic structure. The hybrids have conceptual and (when expanded in terms of Gaussian functions) computational advantages over conventional hybrids which are essentially adapted to spherically-symmetric environments. Formaldehyde is used to illustrate the use of these orbitals.     

Fast-atom bombardment-induced condensation of glycerol with ammonium surfactants II: Time dependence of mass spectra and tandem mass spectra

Studies of fast-atom bombardment (FAB)-induced condensation between trimethyltetradecylammonium cations and glycerol have been extended to consider spectral time dependence. To enhance reproducibility of time dependence, a modified FAB target was used. FAB mass spectrometry of deuterium-labeled surfactants and FAB/collision-induced dissociation (CID) of nonlabeled material demonstrate that products of condensation at the surfactant “head group” predominate early in the analysis, while tail adducts become prominent later. This time dependence correlates with the expected surface activity of the products. It is incompatible with gas-phase reaction, but consistent with reaction in the condensed phase. Subtle variations in the surface activities of various condensation products (derived from changes in the number of hydroxyls from the reactive glycerol radical or in the position of attack along the surfactant chain) are reflected in the time dependence of FAB and CID spectra. CID spectra of deuterium-labeled cations provide evidence for intramolecular hydrogen transfer from the surfactant tail to the head within a surfactant radical. This transfer shows no significant kinetic isotope effect.     

Improving fast atom bombardment mass spectra: The influence of some controllable parameters on spectral quality

The relative effects of adjustable fast atom bombardment (FAB) parameters (choice of matrix, primary atom flux, and primary atom energy) on the appearance of FAB spectra (including signal-to-noise, signal-to-background, and signal-to-matrix ratios) of several organic dyes have been investigated. Beam-induced chemical damage is minimized by lowering the primary atom flux, by raising the primary atom energy, and by selecting a matrix with radical scavenging properties (e.g., m-nitrobenzyl alcohol). The relative importance in minimizing this chemical damage is choice of matrix > primary atom flux > (nominal) primary atom energy, but optimization of the parameters involves a trade-off between sensitivity and damage. The effect of these parameters on thermal damage (fragmentation) is much less. It can be concluded from comparison of the dyes that the extent of beam damage does not depend simply on the standard reduction potential of the analyte.