Interactions of anesthetics with the membrane-water interface

Although the potency of conventional anesthetics correlates with lipophilicity, an affinity to water also is essential. It was recently found that compounds with very low affinities to water do not produce anesthesia regardless of their lipophilicity. This finding implies that clinical anesthesia might arise because of interactions at molecular sites near the interface of neuronal membranes with the aqueous environment and, therefore, might require increased concentrations of anesthetic molecules at membrane interfaces. As an initial test of this hypothesis, we calculated in molecular dynamics simulations the free energy profiles for the transfer of anesthetic 1,1,2-trifluoroethane and nonanesthetic perfluoroethane across water-membrane and water-hexane interfaces. Consistent with the hypothesis, it was found that trifluoroethane, but not perfluoroethane, exhibits a free energy minimum and, therefore, increased concentrations at both interfaces. The transfer of trifluoroethane from water to the nonpolar hexane or interior of the membrane is accompanied by a considerable, solvent-induced shift in the conformational equilibrium around the C-C bond.     

Penultimate unit effects in the free‐radical copolymerization of styrene with acrylonitrile according to theoretical thermochemistry

Penultimate unit effects in the free‐radical copolymerization of styrene with acrylonitrile were investigated by the consideration of the theoretical thermochemistry of three subsequent propagation steps in the copolymerization process at 298 K and the electronic properties of the relevant reactants. The total energies, zero‐point energies incorporating a 0.96 scale factor, and thermal enthalpy corrections for all optimized structures were computed with the B3LYP density functional theory and the 6‐311G(d,p) basis set. The penultimate unit effect on the enthalpy of reaction for elementary propagation reactions ranged from ?1.2 to 2.7 kcal/mol. The enthalpies of elementary copolymerization propagation reactions showed that penultimate unit effects depended not only on the γ substituent itself but also on the terminal unit of the growing radical and the monomer being attached. The exothermicity of the addition of radicals, varying in the penultimate unit for a given monomer, was lower for more polar radicals and smaller Mulliken charges at the radical atom, except for radicals with a CN substituent placed in the γ position when they reacted with acrylonitrile. For the latter system, the repulsive interactions between the CN substituent and nitrile group of the monomer being added contributed to the reaction enthalpy. Almost no penultimate unit effect was detected upon spin distribution at the radical atom, and this probably indicated the absence of the independent implicit penultimate model. The results obtained strengthen the concept of the inseparability of implicit and explicit penultimate unit effects in radical copolymerization. However, it appears that for the styrene–acrylonitrile copolymerization system, the explicit penultimate model prevails over the implicit penultimate model. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 3592–3603, 2002     

Causal loop diagrams as a de-escalation technique

Escalation of commitment, the tendency of decision makers to keep on investing in losing courses of action, has been shown to be a costly decision bias that affects many areas of decision making. Even though escalation is a widely studied phenomenon, there has been comparatively little research on how to avoid this bias. The present study focuses on de-escalation of commitment and proposes that causal loop diagrams (CLDs) can help to decrease escalating commitment to a failing course of action. By means of an experiment, this study shows that using a CLD decreases escalation tendencies.     

Energy landscapes, supergraphs, and "folding funnels" in spin systems

Dynamical connectivity graphs, which describe dynamical transition rates between local energy minima of a system, can be displayed against the background of a disconnectivity graph which represents the energy landscape of the system. The resulting supergraph describes both dynamics and statics of the system in a unified coarse-grained sense. We give examples of the supergraphs for several two-dimensional spin and protein-related systems. We demonstrate that disordered ferromagnets have supergraphs akin to those of model proteins whereas spin glasses behave like random sequences of amino acids that fold badly.     

Theoretical calculation of the coiled-coil stability in water in the context of its possible use as a molecular rack

The coiled-coil stability and rigidity may be of importance for molecular electronics (electronically bistable molecules). The coiled-coil binding free energy has been calculated using molecular dynamics (MD). The energy has been computed as a difference of the appropriate free energies; derived for the coiled-coil and isolated alpha-helices separately. All MD simulations have been performed using an explicit model of the solvent, whereas the continuum solvent approach has been applied to analyze the MD trajectories. The computed stability of the coiled-coil is of the order of -87 kcal/mol, i.e., about -1.2 kcal/mol per amino acid residue, and arises mainly from the electrostatic interactions and hydrophobic effect. The entropy term has been roughly estimated to be of the order of -22 kcal/mol. This assures that coiled-coil polypeptides may be used as a stable molecular scaffolding.     

On the use of electrostatic potential derived charges in molecular mechanics force fields. The relative solvation free energy of cis- and trans-N-methyl-acetamide

We have carried out free energy perturbation calculations on the relative solvation free energy of cis- and trans-N-methyl-acetamide (NMA). Experimentally, the solvation free energy difference has been found to be near zero. Using 6-31G* ab initio electrostatic potential derived charges for both the cis and trans conformations, we calculate a solvation free energy difference of 0.1 ± 0.1 kcal/mol. Using the 6-31G* charges derived for the trans conformation for both the cis and trans models leads to a solvation free energy difference of 0.9 ± 0.1 kcal/mol, compared to the value of 2.2 kcal/mol determined for the OPLS model for trans-NMA.