Development of novel 3D-QSAR combination approach for screening and optimizing B-Raf inhibitors in silico

B-Raf is a member of the RAF family of serine/threonine kinases: it mediates cell division, differentiation, and apoptosis signals through the RAS-RAF-MAPK pathway. Thus, B-Raf is of keen interest in cancer therapy, such as melanoma. In this study, we propose the first combination approach to integrate the pharmacophore (PhModel), CoMFA, and CoMSIA models for B-Raf, and this approach could be used for screening and optimizing potential B-Raf inhibitors in silico. Ten PhModels were generated based on the HypoGen BEST algorithm with the flexible fit method and diverse inhibitor structures. Each PhModel was designated to the alignment rule and screening interface for CoMFA and CoMSIA models. Therefore, CoMFA and CoMSIA models could align and recognize diverse inhibitor structures. We used two quality validation methods to test the predication accuracy of these combination models. In the previously proposed combination approaches, they have a common factor in that the number of training set inhibitors is greater than that of testing set inhibitors. In our study, the 189 known diverse series B-Raf inhibitors, which are 7-fold the number of training set inhibitors, were used as a testing set in the partial least-squares validation. The best validation results were made by the CoMFA09 and CoMSIA09 models based on the Hypo09 alignment model. The predictive r(2)(pred) values of 0.56 and 0.56 were derived from the CoMFA09 and CoMSIA09 models, respectively. The CoMFA09 and CoMSIA09 models also had a satisfied predication accuracy of 77.78% and 80%, and the goodness of hit test score of 0.675 and 0.699, respectively. These results indicate that our combination approach could effectively identify diverse B-Raf inhibitors and predict the activity.     

氮化钛纳米管作为钒电池负极对V(Ⅱ)/V(Ⅲ)的电化学性能

采用阳极氧化法在钛箔表面原位生长二氧化钛纳米管,随后在氨气氛围中氮化还原制备氮化钛纳米管,并将此电极直接作为钒电池的负极,研究其对V（Ⅱ）/V（Ⅲ）的电化学性能。通过X射线衍射（XRD）、扫描电镜（SEM）以及X射线光电子能谱（XPS）等材料测试手段对氮化钛纳米管的形貌、组成和结构进行表征。分析结果表明,氨气高温氮化后,前驱体TiO₂相转变为TiN和Ti₂N相,表面元素组成为Ti-N-O,Ti-N和Ti-O,且其形貌仍保持纳米管的微观结构。采用循环伏安,电化学阻抗和充放电测试表明,氮化钛纳米管对负极电解液中的V（Ⅱ）/V（Ⅲ）展现了优异的电催化活性和可逆性,这主要归因于氮化钛纳米管大的电化学真实表面积和快速的电子转移通道。     

Pore-spanning lipid membrane under indentation by a probe tip: a molecular dynamics simulation study

We study the indentation of a free-standing lipid membrane suspended over a nanopore on a hydrophobic substrate by means of molecular dynamics simulations. We find that in the course of indentation the membrane bends at the point of contact and the fringes of the membrane glide downward intermittently along the pore edges and stop gliding when the fringes reach the edge bottoms. The bending continues afterward, and the large strain eventually induces a phase transition in the membrane, transformed from a bilayered structure to an interdigitated structure. The membrane is finally ruptured when the indentation goes deep enough. Several local physical quantities in the pore regions are calculated, which include the tilt angle of lipid molecules, the nematic order, the included angle, and the distance between neighboring lipids. The variations of these quantities reveal many detailed, not-yet-specified local structural transitions of lipid molecules under indentation. The force-indentation curve is also studied and discussed. The results make a connection between the microscopic structure and the macroscopic properties and provide deep insight into the understanding of the stability of a lipid membrane spanning over nanopore.     

Effect of hydrophobicity of monomers on the structures and properties of 1,3:2,4-dibenzylidene-D-sorbitol organogels and polymers prepared by templating the gels

The effects of hydrophobicity of monomers on the structures and properties of 1,3:2,4-dibenzylidene-D-sorbitol (DBS) organogels and nanostructured polymers prepared by templating the self-assembled organogels were investigated in this study. Hydrophobic styrene (St), hydrophilic methyl (methacrylate) (MMA), and their mixtures were chosen as the monomers. Though the gelation time varied, the average diameters (around 10 nm) of DBS nanofibrils found in the resulting organogels did not change significantly, for monomers of different hydrophobicity, as observed by transmission electron microscopy (TEM). Nonetheless, new structures, DBS microaggregates, appeared when the MMA content in the monomers was high enough. These irregular, micrometer-sized DBS structures (microaggregates) may have formed because the aggregated DBS molecules were influenced by the MMA monomers, due to the hydrogen bonding between DBS and MMA. This was confirmed by Fourier transform infrared (FTIR) spectroscopy and could also explain the differences in the gelation time of the DBS organogels: gels form more slowly in MMA than in St because of the competing interaction, hydrogen bonding, between DBS and MMA. Subsequently, we thermally initiated the free-radical polymerization of these St/MMA co-monomers. PS/PMMA copolymers were obtained, and no macroscopic phase separation occurred after the polymerization. Finally, the porous structures of the polymers produced by the solvent extraction of the DBS templates were observed, using TEM.     

Electrophoresis of an arbitrarily oriented toroid in an unbounded electrolyte solution

The electrophoresis of a non-conducting rigid toroid in an unbounded Newtonian electrolyte solution having an arbitrary orientation is modeled theoretically under the condition of low surface potential. In particular, the influence of the orientation angle, defined as the angle between the applied electric field and the center line of the toroid, on its electrophoretic behavior as the thickness of double layer varies is investigated. The results of numerical simulation reveal that both the thickness of double layer and the orientation angle can influence appreciably the mobility of the toroid. In general, for a fixed orientation, the mobility of the toroid increases with decreasing double layer thickness, and for a fixed double layer thickness, the scaled electrophoresis mobility increases with increasing orientation angle. If the double layer is infinitely thin, then the present result reduces to that predicted by Smoluchowski, that is, the scaled electrophoretic mobility of the toroid is unity, and is not influenced by its shape. On the other hand, if it is infinitely thick, then the present result follows the same trend as that predicted by Henry, that is, the electrophoretic mobility of the toroid depends highly on its form effect, and the thicker the double layer the smaller that mobility. If the thickness of double layer is comparable to the radius of a toroid, the variation in the orientation angle can lead to as much as 40% difference in the mobility.     

Synthesis of the phenanthrene and cyclohepta[a]naphthalene skeletons via gold(I)-catalyzed intramolecular cyclization of unactivated cyclic 5-(2-arylethyl)-1,3-dienes

The gold(I)-catalyzed hydroarylation of cyclohexa-1,3-dienes bearing an aryl group and a gem-diester in the tether proceeds in a 1,4-addition manner and in a diastereoselective fashion to afford perhydrophenanthrene rings. The reaction proceeded via attack of the aryl group onto the gold-activated cyclic dienes followed by rearomatization and protodeauration to generate perhydrophenanthrenes in good yields. This hydroarylation can be applied to the synthesis of perhydrocyclohepta[a]naphthalenes from aryl-tethered cycloheptadienes and the gold(I) catalyst.     

Copper(I)-anilide complex [Na(phen)3][Cu(NPh2)2]: an intermediate in the copper-catalyzed N-arylation of N-phenylaniline

Complex [Na(phen)₃][Cu(NPh₂)₂] ( 2 ), containing a linear bis(N‐phenylanilide)copper(I) anion and a distorted octahedral tris(1,10‐phenanthroline)sodium counter cation, has been isolated from the catalytic C? N cross‐coupling reaction with the CuI/phen/tBuONa (phen=1,10‐phenanthroline) catalytic system. Complex 2 can react with 4‐iodotoluene to produce 4‐methyl‐N,N‐diphenylaniline ( 3 a ) with 70.6 % yield. In addition, 2 can work as an effective catalyst for C? N coupling under the same reaction conditions, thus indicating that 2 is the intermediate of the catalytic system. Both [Cu(NPh₂)₂]^? and [Cu(NPh₂)I]^? have been observed by in situ electron ionization mass spectrometry (ESI‐MS) under catalytic reaction conditions, thus confirming that they are intermediates in the reaction. A catalytic cycle has been proposed based on these observations. The molecular structure of 2 has been determined by single‐crystal X‐ray diffraction analysis.     

质子惰性介质中芳香族硝基化合物在铂微电极上的电化学行为

采用循环伏安法(CV)和电化学阻抗谱(EIS)技术,以铂微电极为工作电极,大面积铂丝为对电极,饱和甘汞电极为参比电极,研究了不同芳香族硝基化合物(NA)(硝基苯、硝基萘和间二硝基苯)在含有四丁基高氯酸铵(TBAP)电解质的N,N-二甲基甲酰胺(DMF)有机溶液中的电化学行为,并探讨了扫描速率、硝基数目和苯环数目等因素对硝基电化学还原特性的影响.结果表明:三种芳香族硝基化合物在铂微电极上的反应均为扩散控制的准可逆过程;苯环上硝基数目的增加容易使硝基在较低电位下还原;苯环数目的增加导致硝基的还原峰电流急剧减小.     

Silica-modified Fe-doped calcium sulfide nanoparticles for in vitro and in vivo cancer hyperthermia

In this study, sulfide-based magnetic Fe-doped CaS nanoparticles modified with a silica layer were investigated for cancer hyperthermia. A polyvinyl pyrrolidone polymer was used as the coupling agent. The developed nanoparticles contained 11.6 wt% iron concentration, and their X-ray diffraction pattern was similar to those of CaS and Fe–CaS nanoparticles. The average particle size was approximately 47.5 nm and homogeneously dispersed in aqueous solutions. The major absorption bands of silica were observed from the FTIR spectrum. The magnetic properties and heating efficiency were also examined. The specific absorption ratio of nanoparticles at a concentration of 10 mg/mL at 37 °C in an ethanol carrier fluid was 37.92 W/g, and the nanoparticles would raise the temperature to over 45 °C within 15 min. A cytotoxicity analysis revealed that the nanoparticles had good biocompatibility, which indicated that the nanoparticles did not affect cell viability. The therapeutic effects of the nanoparticles were investigated using in vitro and animal studies. Cells seeded with nanoparticles and treated under an AC magnetic field revealed a percentage of cytotoxicity (60%) that was significantly higher from that in other groups. In the animal study, during a hyperthermia period of 15 days, tumor-bearing Balb/c mice that were subcutaneously injected with nanoparticles and exposed to an AC magnetic field manifested a reduction in tumor volume. The newly developed silica-modified Fe–CaS nanoparticles can thus be considered a promising and attractive hyperthermia thermoseed.     

Effect of pyrogallol-poly(ethylene glycol) on stabilization,structure, and interparticle potential of concentrated nickel nanoparticle suspensions

Nickel nanoparticles with an average diameter of 90 nm have been dispersed in de-ionized water with addition of pyrogallol-poly(ethylene glycol) polymers, hereafter termed Gallol-PEG, of different molecular weights as a surfactant. Measurement of zeta potential, infrared spectrum, and adsorption isotherm confirms the preferential anchoring from polar end of the surfactant molecules on the particle surface, forming a Langmuir-typed adsorption layer (adlayer) to provide an electrosteric stabilization. Concentrated nanoparticle suspensions with a solids loading up to 40 vol.% and an apparent viscosity lower than 10 Pa s at a shear rate of 100 s⁻¹ have been obtained, indicating that the Gallol-PEG adsorption is effective in facilitating the suspension flow under stress. The suspensions are yet fractal in structure with an experimentally determined fractal dimension of 2.1, revealing that a reaction-limited cluster–cluster aggregation is operative. This weakly coagulated fractal structure stems primarily from the shallow interparticle attraction operative over a moderate interparticle separation (~5–10 nm), and is prone to the adlayer thickness and the molecular conformation of the surfactant.