Periodate-triggered cross-linking of DOPA-containing peptide-protein complexes

Chemical cross-linking is a powerful methodology for analyzing proteins-small molecule and protein-protein interactions. We describe the development of a new chemical cross-linking reaction for the study of protein complexes. Specifically, we show that molecules containing an ortho dihydroxyarene unit can be oxidized selectively with sodium periodate in the presence of native proteins, producing an ortho quinone intermediate that can cross-link with suitable nearby protein residues. We demonstrate the efficacy and specificity of this chemistry for a peptide-protein complex and also deduce the binding site of an artificial activation domain on a proteasome subcomplex.     

Molecular and electronic structure of four- and five-coordinate cobalt complexes containing two o-phenylenediamine- or two o-aminophenol-type ligands at various oxidation levels: an experimental, density functional, and correlated ab initio study

The bidentate ligands N-phenyl-o-phenylenediamine, H(2)((2)L(N)IP), or its analogue 2-(2-trifluoromethyl)anilino-4,6-di-tert-butylphenol, ((4)L(N)IP), react with [Co(II)(CH(3)CO(2))(2)]4H(2)O and triethylamine in acetonitrile in the presence of air yielding the square-planar, four-coordinate species [Co((2)L(N))(2)] (1) and [Co((4)L(O))(2)] (4) with an S=1/2 ground state. The corresponding nickel complexes [Ni((4)L(O))(2)] (8) and its cobaltocene reduced form [Co(III)(Cp)(2)][Ni((4)L(O))(2)] (9) have also been synthesized. The five-coordinate species [Co((2)L(N))(2)(tBu-py)] (2) (S=1/2) and its one-electron oxidized forms [Co((2)L(N))(2)(tBu-py)](O(2)CCH(3)) (2 a) or [Co((2)L(N))(2)I] (3) with diamagnetic ground states (S=0) have been prepared, as has the species [Co((4)L(O))(2)(CH(2)CN)] (7). The one-electron reduced form of 4, namely [Co(Cp)(2)][Co((4)L(O))(2)] (5) has been generated through the reduction of 4 with [Co(Cp)(2)]. Complexes 1, 2, 2 a, 3, 4, 5, 7, 8, and 9 have been characterized by X-ray crystallography (100 K). The ligands are non-innocent and may exist as catecholate-like dianions ((2)L(N)IP)(2-), ((4)L(N)IP)(2-) or pi-radical semiquinonate monoanions ((2)L(N)ISQ)(*) (-), ((4)L(N)ISQ)(*) (-) or as neutral benzoquinones ((2) L(N)IBQ)(0), ((4) L(N)IBQ)(0); the spectroscopic oxidation states of the central metal ions vary accordingly. Electronic absorption, magnetic circular dichroism, and EPR spectroscopy, as well as variable temperature magnetic susceptibility measurements have been used to experimentally determine the electronic structures of these complexes. Density functional theoretical (DFT) and correlated ab initio calculation have been performed on the neutral and monoanionic species [Co((1)L(N))(2)](0,-) in order to understand the structural and spectroscopic properties of complexes. It is shown that the corresponding nickel complexes 8 and 9 contain a low-spin nickel(II) ion regardless of the oxidation level of the ligand, whereas for the corresponding cobalt complexes the situation is more complicated. Spectroscopic oxidation states describing a d(6) (Co(III)) or d(7) (Co(II)) electron configuration cannot be unambiguously assigned.     

Diels-Alder additions of benzynes within helicene skeletons

Although the contortions required are unprecedented, the benzynes formed by the fluoride-induced elimination of TMSOTf from o-trimethylsilyl [6]- and [7]-helicenol triflates add to another ring of the helicenes rather than to an external furan molecule.     

Stochastic Liouville equation simulation of multidimensional vibrational line shapes of trialanine

The line shapes detected in coherent femtosecond vibrational spectroscopies contain direct signatures of peptide conformational fluctuations through their effect on vibrational frequencies and intermode couplings. These effects are simulated in trialanine using a Green's function solution of a stochastic Liouville equation constructed for four collective bath coordinates (two Ramachandran angles affecting the mode couplings and two diagonal energies). We find that fluctuations of the Ramachandran angles which hardly affect the linear absorption can be effectively probed by two-dimensional spectra. The signal generated at k(1)+k(2)-k(3) is particularly sensitive to such fluctuations.     

Measurement of cell migration on surface-bound fibronectin gradients

A novel technique for the quantitative observation of cell migration along linear gradient substrates functionalized with adhesive proteins is presented. Gradients of the cell adhesion molecule fibronectin are generated by the cross diffusion of functionalizable alkanethiols on gold and characterized by X-ray photoelectron spectroscopy and surface plasmon resonance. Two distinct migration assays are described that characterize the movement of either sparsely populated noncontacting cells or a confluent monolayer of cells into free space. The drift speed of bovine aortic endothelial cells is measured and shown to increase along a fibronectin gradient when compared to a uniform control substrate using both assays. The results of these experiments establish reproducible conditions for studies of cell migration on gradients of surface-bound ligands.     

Regioselective side-chain as well as nuclear monobromination of aromatic substrates with N-bromosuccinimide using phosphotungstic acid supported on zirconia as a heterogeneous catalyst

Regioselective monobromination of aromatic substrates with N-bromosuccinimide has been achieved in excellent isolated yields (84–98%) using phosphotungstic acid supported on zirconia as a novel heterogeneous catalyst. The catalyst has been characterized by means of X-ray diffraction (XRD), scanning electron microscopy (SEM), surface area and acidity measurements. Remarkably, the new catalyst system described brought about the side-chain bromination of aromatics to afford bromomethyl arenes in excellent yields (86–98%) without the need for a radical initiator. Recovery and recylability of the catalyst have been well established.     

Sugar conjugates of fulvestrant (ICI 182,780): efficient general procedures for glycosylation of the fulvestrant core

We have prepared glucose and cellobiose conjugates at the phenolic 3- and hydroxylic 17-positions of the pure anti-estrogenic compound fulvestrant (ICI 182,780), which has recently been approved in the USA for the treatment of advanced postmenopausal breast cancer. Glycosylation at the 17-position was achieved most effectively using pivaloyl protection of the sugar imidates employed, which we found suppressed the competing transacylation reaction and led to improved yields of the product glycosides.     

Hydrothermal synthesis and crystal structure of Cs6[(UO2)4(W5O21)(OH)2(H2O)2]: a new polar uranyl tungstate

The hydrothermal reaction of UO₃, WO₃, and CsIO₄ leads to the formation of Cs₆[(UO₂)₄(W₅O₂₁)(OH)₂(H₂O)₂] and UO₂(IO₃)₂(H₂O). Cs₆[(UO₂)₄(W₅O₂₁)(OH)₂(H₂O)₂] is the first example of a hydrothermally synthesized uranyl tungstate. It's structure has been determined by single-crystal X-ray diffraction. Crystallographic data: tetragonal, space group I4 cm, , , Z=4, MoKα, , R(F)=2.84% for 135 parameters with 2300 reflections with I>2σ(I). The structure is comprised of two-dimensional anionic layers that are separated by Cs⁺ cations. The coordination polyhedra found in the novel layers consist of UO₇ pentagonal bipyramids, WO₆ distorted octahedra, and WO₅ square pyramids. The UO₇ polyhedra are formed from the binding of five equatorial oxygen atoms around a central uranyl, UO₂²⁺, unit. Both bridging and terminal oxo ligands are employed in forming the WO₅ square pyramidal units, while oxo, hydroxo, and aqua ligands are found in the WO₆ distorted octahedra. In the layers, four (UO₂)O₅ polyhedra corner share with equatorial oxygen atoms to form a U₄O₂₄ tetramer entity with a square site in the center; a tungsten atom populates the center of each of these sites to form a U₄WO₂₅ pentamer unit. The pentamer units that result are connected in two dimensions by edge-shared dimers of WO₆ octahedra to form the two-dimensional [(UO₂)₄(W₅O₂₁)(OH)₂(H₂O)₂]^6- layers. The lack of inversion symmetry in Cs₆[(UO₂)₄(W₅O₂₁)(OH)₂(H₂O)₂] can be directly contributed to the WO₅ square pyramids found in the pentamer units. In the structure, all of these polar polyhedra align their terminal oxygens in the same orientation, along the c axis, thus resulting in a polar compound.     

Stereoselective synthesis of the cyclic ether core of (+)-laurenyne

A concise enantioselective synthesis of the cyclic ether core of the marine natural product (+)-laurenyne has been accomplished using ring-closing metathesis for medium-ring construction.     

A solvent-free synthesis of coumarins using a Wells-Dawson heteropolyacid as catalyst

Substituted coumarins are synthesized from phenols and β-ketoesters by the Pechmann reaction, using a Wells-Dawson heteropolyacid (H₆P₂W₁₈O₆₂·24H₂O) as catalyst by a solvent-free procedure. This one requires low reaction times, 130 °C temperature and as little as 1 mol % of Wells-Dawson acid, obtaining good to excellent yields of coumarins. The catalyst showed to be reusable with no differences in the yields. The results are compared with those of the reactions performed in toluene solution. The presented synthetic procedure is a convenient, clean and fast alternative for synthesizing 4-substituted coumarins (17 examples).