Atomic force microscopy: A nanoscopic view of microbial cell surfaces

The atomic force microscope (AFM) is a powerful instrument for microbiological investigation. It has evolved from an imaging tool used to investigate microbial surfaces at high resolution in their physiological environment into a lab-on-a-tip device, which allows more quantitative analysis of biological samples (from molecules to cells) in aqueous liquids. Atomic force microscopy provides information about the nanoscale architecture of microbes and about the localization and interactions of their individual constituents. Microbial interactions play essential roles in biology, medicine, ecology, biotechnology, food science and contribute to phenomena as varied as bacterial infections, biofilm formation, and bacterial adhesion to surfaces. In this review, we focus on recent developments offered by the rapid advances in AFM imaging and force spectroscopy with emphasizes on microbial research.     

Conformal coating of nanoscale features of microporous Anodisc membranes with zirconium and titanium oxides

We have successfully coated a nanofeatured material with ZrO2 and TiO2 using a polymer assisted deposition technique.     

The Supramolecular Assembly of Porphyrin Arrays

The self-assembly of porphyrin arrays containing three, seven or eleven porphyrins results from the interaction of the bis-pyridyl porphyrin 1 with the zinc porphyrins 2, 3, or 4, respectively.     

Effects of confinement,geometry, inlet velocity profile,and Reynolds number on the asymmetry of opposed-jet flows

The opposed-jet counterflow configuration is widely used to measure fundamental flame properties that are essential targets for validating chemical kinetic models. The main and key assumption of the counterflow configuration in laminar flame experiments is that the flow field is steady and quasi-one-dimensional. In this study, experiments and numerical simulations were carried out to investigate the behavior and controlling parameters of counterflowing isothermal air jets for various nozzle designs, Reynolds numbers, and surrounding geometries. The flow field in the jets’ impingement region was analyzed in search of instabilities, asymmetries, and two-dimensional effects that can introduce errors when the data are compared with results of quasi-one-dimensional simulations. The modeling involved transient axisymmetric numerical simulations along with bifurcation analysis, which revealed that when the flow field is confined between walls, local bifurcation occurs, which in turn results in asymmetry, deviation from the one-dimensional assumption, and sensitivity of the flow field structure to boundary conditions and surrounding geometry. Particle image velocimetry was utilized and results revealed that for jets of equal momenta at low Reynolds numbers of the order of 300, the flow field is asymmetric with respect to the middle plane between the nozzles even in the absence of confining walls. The asymmetry was traced to the asymmetric nozzle exit velocity profiles caused by unavoidable imperfections in the nozzle assembly. The asymmetry was not detectable at high Reynolds numbers of the order of 1000 due to the reduced sensitivity of the flow field to boundary conditions. The cases investigated computationally covered a wide range of Reynolds numbers to identify designs that are minimally affected by errors in the experimental procedures or manufacturing imperfections, and the simulations results were used to identify conditions that best conform to the assumptions of quasi-one-dimensional modeling.     

Trace elements in marine waters by atomic absorption spectrophotometry

Trace elements of interest in sea water fall into two well-defined categories. Strontium, lithium, and rubidium are ideally suited to determination by atomic absorption spectrophotometry since minimal sample preparation is required and standard equipment may be utilized; standardization of techniques by which large batches of samples may be rapidly and accurately processed, is important. The transition elements are present in significantly lower concentrations and in complex, and largely unknown, chemical forms; pre-concentration is vital, Solvent extraction can also provide a crude differentiation between total and extractable fractions.     

Dynamic modeling of stepwise internal transport barrier formation in DIII-D negative-central-shear discharges

The GLF23 transport model is used to dynamically follow bifurcations in the energy and toroidal momentum confinement in DIII-D discharges with an internal transport barrier. The temperatures and toroidal velocity profiles are evolved while self-consistently computing the effects of E x B shear stabilization during the formation and expansion of internal transport barriers. The barrier is predicted to form in a stepwise fashion through a series of sudden jumps in the core-electron and ion temperatures and toroidal rotation velocity. These results are consistent with experimental observations. In the simulations, the step transitions are a direct result of local E x B driven transport bifurcations.     

Signature of turbulent zonal flows observed in the DIII-D tokamak

The spectrum of turbulent density fluctuations at long poloidal wavelengths in the edge plasma of the DIII-D tokamak peaks at nonzero radial wave number. The associated electric-potential fluctuations cause sheared E x B flows primarily in the poloidal direction. These zonal flows have been predicted by theory and are believed to regulate the overall level of turbulence and anomalous transport. This study provides the first indirect experimental identification of zonal flows.     

A feasibility study into the production of a freeze-dried oyster reference material for paralytic shellfish poisoning toxins

Matrix reference materials are an essential component for the validation and quality control of analytical methodologies for the quantitation of marine biotoxins in shellfish. Given the potential advantages of reference materials in powder form, a study was conducted to assess the feasibility for the production of a freeze-dried oyster tissue reference material containing a range of important paralytic shellfish poisoning toxins. One bulk sample of a wet oyster tissue homogenate was generated following mass culturing of toxic Alexandrium and oyster feeding experiments. The bulk tissue was used to prepare untreated wet frozen aliquots with the remainder being freeze-dried and processed into appropriately-sized powder samples. A pre-column oxidation LC-FLD analysis was used to confirm the absence of any chromatographic artefacts resulting from the processing and to confirm acceptable homogeneity of the tissues. Excellent stability over both the short-term (1 month) and long-term (1 year) of the freeze-dried material was demonstrated as compared with the stability of the untreated wet tissue. A post-column oxidation LC-FLD method was used to confirm the absence of toxin epimerisation in freeze-dried tissues which were observed in the wet tissues. Overall the work showed the feasibility of an approach to produce a homogenous freeze-dried oyster matrix material with enhanced stability in comparison to the untreated wet tissue. The potential for use of the process for preparation of large scale production batches of a freeze-dried CRM for paralytic shellfish poisoning toxins has therefore been demonstrated.