The molecular structure and conformation of trichloronitromethane as determined by gas-phase electron diffraction and theoretical calculations

The molecular structure of trichloronitromethane has been studied in the gas phase using electron diffraction data. The molecules are found to undergo low barrier rotation about the CN bond with a planar CNO₂ moiety in agreement with HF/MP2/B3LYP/6-311G(d,p) calculations. The experimental data are consistent with a dynamic model using a potential function for the torsion of V = (V₆/2)(1 − cos 6τ). The major geometrical parameters (r_g and ) for the eclipsed form, obtained from least squares analysis of the data are as follows: r(NO₃) = r(NO₄) = 1.213(2) Å, r(CN) = 1.592(6) Å, r(CCl)_av = 1.749(1) Å, Cl₅CN/Cl₆CN = 109. 6°/106.3°(2), O₃NC/O₄NC = 117. 6°/114.1°(4), τCl₅C₁N₂O₃ = 0.0°, and V₆ = 0.20(25) kcal/mol.     

New routes to 1-deoxy-(3,4-dihydro-7,8-dimethyl-2,4-dioxopyrimido[4,5-b]-quinolin-10(2H)yl)-D-ribitols (5-deazariboflavins)

The acid-catalyzed reaction of 6-(N-D-ribityl-3,4-xylidino)uracil ( 1 ) with trimethyl ortho-formate yields a bis(methoxymethylene) derivative ( 2 ), which is readily deprotected to give 5-deazariboflavin ( 3 ). Correspondingly, 5-methyl-5-deazariboflavin ( 6 ) is produced by cyclization of the tetraacetate of 1 with acetyl chloride in the presence of stannic chloride followed by deacetylation.     

The crystal and molecular structures of bis (pentafluorophenyl)disulphide and bis(pentafluorophenyl)diselenide

The structures of (C₆F₅)₂S₂ and (C₆F₅)₂Se₂ have been determined by single crystal, X-ray diffraction techniques. The compounds are isostructural although the molecules are packed differently in the crystal in comparison with their phenyl analogues. Important bond lengths and angles are: SS, 2.059(4)Å; SeSe, 2.319(4)Å; SC, 1.770Å; SeC, 1.910(15)Å; SSC, 101.3(3)°; SeSeC, 98.8(1)°.     

The thermal decomposition of ammonium metavanadate

On heating, ammonium metavanadate (AMV) decomposes in several atmospheredependent stages. An important decomposition intermediate, ammonium hexavanadate (AHV), may also be prepared by wet-chemical methods and the kinetic parameters for the thermal decomposition of AMV and of the AHV preparation have been obtained. The kinetic study has been supplemented by surface-area measurements and by electron microscopic examination of the surfaces of reactant, intermediate and product crystallites. On the basis of the type of decomposition curve, the measured activation energies, and the effects of oxygen and water vapour on the decomposition rate, it has been concluded that in vacuum and in inert atmospheres the evolution of ammonia is the rate-determining step, while in oxidizing atmospheres evolution of water is rate determining. Comparison of the kinetic parameters with thermodynamic data for the decomposi. tion has led to suggestions as to the nature of the activated complexes involved.     

Identification of small molecule inhibitors that distinguish between non-transferrin bound iron uptake and transferrin-mediated iron transport

Chemical genetics is an emerging field that takes advantage of combinatorial chemical and small molecule libraries to dissect complex biological processes. Here we establish a fluorescence-based assay to screen for inhibitors of iron uptake by mammalian cells. Using this approach, we screened the National Cancer Institute's Diversity Set library for inhibitors of non-transferrin bound iron uptake. This screen identified 10 novel small molecule inhibitors of iron transport with IC(50) values that ranged from 5 to 30 microM. Of these ten compounds, only two blocked uptake of iron mediated by transferrin. Thus, this study characterizes the first small molecule inhibitors that distinguish between different pathways of iron transport.     

Thermal degradation of aramids: Part I—Pyrolysis/gas chromatography/mass spectrometry of poly(1,3-phenylene isophthalamide) and poly(1,4-phenylene terephthalamide)

The thermal degradation reactions of poly(1,3-phenylene isophthalamide) or Nomex (I) and poly(1,4-phenylene terephthalamide) or Kevlar (II) aramids have been investigated in the temperature range 300–700°C by pyrolysis/gas chromatography/mass spectrometry. The initial degradation products below 400°C of (I) are carbon dioxide and water. At 400°C benzoic acid and 1,3-phenylenediamine are detected. Benzonitrile, aniline, benzanilide, N-(3-aminophenyl)benzamide as well as carbon monoxide and benzene are evolved in the range 430–450°C. The yields of these products increase rapidly in the range 450–550°C. Isophthalonitrile is observed at 475°C and hydrogen cyanide is detected above 550°C, as are other secondary products such as toluene, tolunitrile, biphenyl, 3-cyanobiphenyl and 3-aminobiphenyl. Pyrolysis of (II) below 500°C evolves only water and trace amounts of carbon dioxide. At 520–540°C the following degradation products have been detected: 1,4-phenylenediamine, benzonitrile, aniline, benzanilide and N-(4-aminophenyl)benzamide. These products as well as carbon dioxide and water increase appreciably between 550°C and 580°C; benzoic acid, terephthalonitrile, benzene and 4-cyanoaniline are also detected in this temperature range. Above 590°C, hydrogen, carbon monoxide, hydrogen cyanide, toluene, tolunitrile, biphenyl, 4-aminobiphenyl and 4-cyanobiphenyl are evolved. Degradation reactions consistent with the formation of these products, which involve initial heterolytic cleavage of the amide linkage for (I) and initial homolytic cleavage of the aromatic NH and amide bonds for (II), are described.     

Cu3(mu-S)2]3+ clusters supported by N-donor ligands: progress toward a synthetic model of the catalytic site of nitrous oxide reductase

By treating Cu(I) complexes of neutral, bidentate N-donor ligands with S8, clusters with novel delocalized mixed-valence [Cu3(mu-S)2]3+ cores have been isolated. X-ray crystal structures and UV-vis and resonance Raman spectral features of these clusters reveal similarities to the tetracopper-sulfide "CuZ" site in nitrous oxide reductase. A delocalized S = 1 ground state for the mixed-valent CuIIICu2II cores is supported by the observation of high symmetry in the X-ray structures and 10-line hyperfine features arising from coupling to three equivalent Cu ions in EPR spectra obtained at room temperature (shown) and 10 K. The delocalization we observe contrasts with the localization reported previously for a [Cu3(mu-O)2]3+ analogue (Root, D. E.; Henson, M. J.; Machonkin, T.; Mukherjee, P.; Stack, T. D. P.; Solomon, E. I. J. Am. Chem. Soc. 1998, 120, 4982), which we rationalized through DFT calculations.     

Approximate molecular orbital theory for inorganic molecules

As a first stage in the development of a suitable molecular orbital method for treating inorganic systems, we consider the possible integral approximations that may be made to reduce the complexity of the computation. The significance of invariance of the approximations to different transformations is discussed and the effect of various levels of neglect of differential overlap is analysed by the S-expansion technique. A method — the many-centre ZDO method — that is computationally feasible but contains more information than the widely used CNDO approximation is given particular consideration.

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Zusammenfassung Als erste Stufe in der Entwicklung einer geeigneten Molekular-orbital-Methode für die Behandlung anorganischer Systeme untersuchen wir mögliche IntegralnÄherungen, die geeignet sind, die Berechnungen zu vereinfachen. Die Bedeutung der Invarianz der NÄherungen unter verschiedenen Transformationen wird diskutiert und der Einflu\ verschiedener Stufen der VernachlÄssigung der differentiellen überlappung wird mit der S-Entwicklungstechnik analysiert. Einer Methode, der Vielzentren-ZDO-Methode, die rechnerisch gut durchführbar ist, aber mehr an Information enthÄlt als die meistens benutzte CNDO-NÄherung, wird besondere Beachtung geschenkt.

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Résumé Dans une première étape lors du développement d'une méthode d'orbitales moléculaires convenant aux systèmes inorganiques, nous envisageons les approximations possible pour les intégrales. On discute la signification de l'invariance des ces approximations par rapport à différentes transformations et l'on analyse par la technique du développement en S l'effet des différents niveaux d'approximation du recouvrement différentiel nul. On considère en particular une méthode — la méthode ZDO polycentrique-quis'avère réalisable numériquementtout en contenant plus d'information que l'approximation CNDO couramment utilisée.

     

DESTRUCTION OF PHOTOREACTIVATING ENZYME BY 365 nm RADIATION*

Abstract— Following the observation that in vivo photoreactivation of 365-nm-induced pyrimidine dimers could not be observed chemically, a study was made of the inactivation of photoreactivating enzyme activity by this near-ultraviolet wavelength. It was observed that: (1) Dimers induced in extracted bacterial DNA by 365 nm radiation are completely photoreactivable and are monomerized as an exponential function of the photoreactivation time. (2) Photoreactivability of 254-nm-induced damage in Escherichia coli B/r Hcr is progressively destroyed in vivo as a function of the dose of 365 nm radiation. (3) The ability of the yeast photoreactivating enzyme to monomerize dimers induced at 365 nm in bacterial DNA is destroyed in vitro as a function of the dose of 365 nm radiation, and at a rate comparable to killing of E. coli. These results are consistent with biological measurements which indicate that photoreactivability of ultraviolet (near and far) lethal damage is reduced by exposure of the bacteria to 365 nm radiation.