Percolation transition in supercritical water: a Monte Carlo simulation study

Computer simulations of water have been performed on the canonical ensemble at 15 different molecular number densities, ranging from 0.006 to 0.018 A-3, along the supercritical isotherm of 700 K, in order to characterize the percolation transition in the system. It is found that the percolation transition occurs at a somewhat higher density than what is corresponding to the supercritical extension of the boiling line. We have shown that the fractal dimension of the largest cluster and the probability of finding a spanning cluster are the most appropriate properties for the location of the true percolation threshold. Thus, percolation transition occurs when the fractal dimension of the largest cluster reaches 2.53, and the probability of finding a cluster that spans the system in at least one dimension and in all the three dimensions reaches 0.97 and 0.65, respectively. On the other hand, the percolation threshold cannot be accurately located through the cluster size distribution, as it is distorted by appearance of clusters crossing the finite simulated system even far below the percolation threshold. The structure of the largest water cluster is dominated by a linear, chainlike arrangement, which does not change noticeably until the largest cluster becomes infinite.     

Four phases of amorphous water: Simulations versus experiment

Multiplicity of the liquid-liquid phase transitions in supercooled water, first obtained in computer simulations [Brovchenko et al., J. Chem. Phys. 118, 9473 (2003)], has got strong support from the recent experimental observation of the two phase transitions between amorphous ices [Loerting et al., Phys. Rev. Lett. 96, 025702 (2006)]. These experimental results allow assignment of the four amorphous water phases (I-IV) obtained in simulations to the three kinds of amorphous ices. Water phase I (rho approximately 0.90 gcm(3)) corresponds to the low-density amorphous ice, phase III (rho approximately 1.10 gcm(3)) to the high-density amorphous ice, and phase IV (rho approximately 1.20 gcm(3)) to the very-high-density amorphous ice. Phase II of model water with density rho approximately 1.00 gcm(3) corresponds to the normal-density water. Such assignment is confirmed by the comparison of the structural functions of the amorphous phases of model water and real water. In phases I and II the first and second coordination shells are clearly divided. Phase I consists mainly of the four coordinated tetrahedrally ordered water molecules. Phase II is enriched with molecules, which have tetrahedrally ordered four nearest neighbors and up six molecules in the first coordination shell. Majority of the molecules in phase III still have tetrahedrally ordered four nearest neighbors. Transition from phase III to phase IV is characterized by a noticeable drop of tetrahedral order, and phase IV consists mainly of molecules with highly isotropic angular distribution of the nearest neighbors. Relation between the structures of amorphous water phases, crystalline ices, and liquid water is discussed.     

Water percolation governs polymorphic transitions and conductivity of DNA

We report on the first computer simulation studies of the percolation transition of water at the surface of the DNA double helix. With increased hydration, the ensemble of small clusters merges into a spanning water network via a quasi-two-dimensional percolation transition. This transition occurs strikingly close to the hydration level where the B form of DNA becomes stable in experiment. Formation of spanning water networks results in sigmoidlike acceleration of long-range ion transport in good agreement with experiment.     

Behavior of a wetting phase near a solid boundary: vapor near a weakly attractive surface

Density profiles of a LJ vapor near a weakly attractive surface with long-range fluid wall potential was studied along the pore coexistence curve. There are two localized density maxima near the pore wall: the first one is caused by localization of the molecules in the minimum of the fluid-wall potential, and the second one reflects adsorption of molecules at the first layer at higher densities. In addition, a third, weak density maximum is observed close to the critical temperature due to the competition between the long-range attractive tail of the fluid-wall potential and the effect of missing neighbors. This maximum separates the region of a gradual density depletion toward the surface due to the missing neighbor effect and the adsorption region further from the surface, where the density gradually increases toward the surface due to the attractive fluid-wall potential. When approaching the bulk critical temperature, this maximum moves away from the surface due to the divergence of the bulk correlation length. Applicability of various equations to describe the vapor density profiles is examined. Excess adsorption of vapor at low temperatures turns into excess depletion at higher temperatures. The crossover temperature increases with increasing pore size and strengthening fluid-wall interaction. The problems of the theory of the surface critical behavior of Ising models in a case of a non vanishing surface field and its mapping on a fluid is discussed.     

Synthesis of the alkaloid dioxyline and other 6,7-dimethoxyisoquinolines in a modified ritter reaction

It has been found that aceto- and benzonitriles and 3,4-dimethoxyphenylacetone in the presence of acetylperchlorate or upon heating in polyphosphoric acid or polyphosphoric ester form the corresponding isoquinoline. The data indicate that the reaction proceeds like a typical Ritter reaction and is defined by electrophilic activation of the carbonyl group of the ketone and the nucleophilicity of the nitrile. This methodology gave the alkaloid dioxyline (dimoxyline), obtained in high yield by the use of benzoylhexachloroantimonate.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 3, pp. 363–368, March, 1992.     

Role of the hydrogen bond in structural phototransformations of admixture centers in molecular crystals

Structural phototransformations of admixture centers, aniline derivatives in naphthalene crystals, which result in drastic changes in the UV spectra of naphthalene, have been found. The study of the IR spectra suggests that there are admixture aniline derivatives of different types, including those with a hydrogen bond between the amino group of an admixture and -electrons of crystal molecules. Possible arrangements of aniline molecules in naphthalene crystals have been calculated by the method of atom-atomic potentials. The results of the calculation allow one to explain peculiarities of the IR spectra and changes in the UV spectra. The mechanism of structural transformations of admixture centers, which result in cleavage (formation) of the H-bond due to optical excitation (annealing) of the crystal, is suggested.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1241–1246, July, 1995.     

Ion dynamics and water percolation effects in DNA polymorphism

The dynamics of ions and water at the surface of DNA are studied by computer simulations in a wide range of hydrations involving the zone of low-hydration polymorphism in DNA. The long-range mobility of ions exhibits a stepwise increase at three distinct hydration levels. The first of them is close to the midpoint of the water percolation transition as well as the midpoint of the transition between A- and B-DNA forms. It coincides with the onset of the dissociation of ion pairs on the DNA surface probably caused by the increase in the water dielectric permittivity due to the appearance of the spanning hydrogen-bonding network. The other two steps are attributed to the formation of percolating water layers on the surface of DNA accompanied by the progressive escape of ions from the DNA surface. The results agree with earlier experimental data and further corroborate the suggested universal mechanism of the low hydration polymorphism in DNA including intraduplex electrostatic condensation close to the water percolation threshold.     

Percolation transition of hydration water: from planar hydrophilic surfaces to proteins

The formation of a spanning hydrogen-bonded network of hydration water is found to occur via a 2D percolation transition in various systems: smooth hydrophilic surfaces, the surface of a single protein molecule, protein powder, and diluted peptide solution. The average number of water-water hydrogen bonds at the percolation threshold varies from 2.0 to 2.3, depending on temperature, system size, and surface properties. Calculation of nH allows an easy estimation of the percolation threshold of hydration water in various systems, including biomolecules.     

Water in nanopores. I. Coexistence curves from Gibbs ensemble Monte Carlo simulations

Coexistence curves of water in cylindrical and slitlike nanopores of different size and water-substrate interaction strength were simulated in the Gibbs ensemble. The two-phase coexistence regions cover a wide range of pore filling level and temperature, including ambient temperature. Five different kinds of two-phase coexistence are observed. A single liquid-vapor coexistence is observed in hydrophobic and moderately hydrophilic pores. Surface transitions split from the main liquid-vapor coexistence region, when the water-substrate interaction becomes comparable or stronger than the water-water pair interaction. In this case prewetting, one and two layering transitions were observed. The critical temperature of the first layering transition decreases with strengthening water-substrate interaction towards the critical temperature expected for two-dimensional systems and is not sensitive to the variation of pore size and shape. Liquid-vapor phase transition in a pore with a wall which is already covered with two water layers is most typical for hydrophilic pores. The critical temperature of this transition is very sensitive to the pore size, in contrast to the liquid-vapor critical temperature in hydrophobic pores. The observed rich phase behavior of water in pores evidences that the knowledge of coexistence curves is of crucial importance for the analysis of experimental results and a prerequiste of meaningful simulations.     

Multiple Phases of Liquid Water

The history of the study of the anomalies of liquid water, from the 17th century up to the present, is reviewed and the current view on the origin of these anomalies is summarized. The hypothesis of the multiple liquid–liquid transitions of water in the supercooled region is consistent with the available experimental and simulation data and provides physical explanation of water behavior in a wide thermodynamic range. The general character of the liquid–liquid transitions of fluids is discussed and the remaining questions are formulated.