Characterization of the 1st and 2nd EF-hands of NADPH oxidase 5 by fluorescence, isothermal titration calorimetry, and circular dichroism

Background

Superoxide generated by non-phagocytic NADPH oxidases (NOXs) is of growing importance for physiology and pathobiology. The calcium binding domain (CaBD) of NOX5 contains four EF-hands, each binding one calcium ion. To better understand the metal binding properties of the 1^st and 2^nd EF-hands, we characterized the N-terminal half of CaBD (NCaBD) and its calcium-binding knockout mutants.

Results

The isothermal titration calorimetry measurement for NCaBD reveals that the calcium binding of two EF-hands are loosely associated with each other and can be treated as independent binding events. However, the Ca²⁺ binding studies on NCaBD(E31Q) and NCaBD(E63Q) showed their binding constants to be 6.5 × 10⁵ and 5.0 × 10² M^-1 with ??Hs of -14 and -4 kJ/mol, respectively, suggesting that intrinsic calcium binding for the 1^st non-canonical EF-hand is largely enhanced by the binding of Ca²⁺ to the 2^nd canonical EF-hand. The fluorescence quenching and CD spectra support a conformational change upon Ca²⁺ binding, which changes Trp residues toward a more non-polar and exposed environment and also increases its ??-helix secondary structure content. All measurements exclude Mg²⁺-binding in NCaBD.

Conclusions

We demonstrated that the 1^st non-canonical EF-hand of NOX5 has very weak Ca²⁺ binding affinity compared with the 2^nd canonical EF-hand. Both EF-hands interact with each other in a cooperative manner to enhance their Ca²⁺ binding affinity. Our characterization reveals that the two EF-hands in the N-terminal NOX5 are Ca²⁺ specific.

Graphical abstract

     

Mesogenic dipyrrins-building blocks for the fabrication of fluorescent and metal-containing materials

A new class of mesogenic dipyrrins is reported and their use in the fabrication of fluorescent and metal-containing self assembling materials is demonstrated.     

H+ versus D+ transfer from HOD+ to CO2: bond-selective chemistry and the anomalous effect of bending excitation

Reactions of HOD(+) with CO(2) have been studied for HOD(+) in its ground state, and with one quantum of excitation in each of its vibrational modes: (001)--predominantly OH stretch, 0.396 eV; (010)--bend, 0.153 eV; and (100)--predominantly OD stretch, 0.293 eV. Integral cross sections and product recoil velocities were recorded for collision energies from threshold to 3 eV. The cross sections for both H(+) and D(+) transfer rise with increasing collision energy from threshold to ～1 eV, then become weakly dependent of the collision energy. All three vibrational modes enhance the total reactivity, but quite mode specifically. The H(+) transfer reaction is enhanced by OH stretch excitation, whereas OD stretch excitation has little effect. Conversely, the D(+) transfer reaction is enhanced by OD stretch excitation, while the OH stretch has little effect. Excitation of the bend strongly enhances both channels. The effects of the stretch excitations are consistent with previous studies of neutral HOD mode-selective chemistry, and can be at least qualitatively understood in terms of a late barrier to product formation. The fact that bend excitation produces the largest overall enhancement is surprising, because this is the lowest energy excitation, and is not obviously connected with the reaction coordinates for either H(+) or D(+) transfer. A rationalization in terms of the effects of water distortion on the potential surface is proposed.     

X-ray Crystal Structure of (CNSSS)2(M)2 (M = AsF6 −, SbF6 −, Sb2F11 −)

The crystal structures of (CNSSS)₂(AsF₆)₂, (CNSSS)₂(SbF6)₂, and two phases of (CNSSS)₂(Sb₂F₁₁)₂ have been determined. The AsF₆ ^?, SbF₆ ^?, and α-Sb₂F₁₁ ^? salts crystallize as reddish-brown plates whereas the β-Sb₂F₁₁ ^? salt crystallizes as green rods. The dication ^ß+SSSNCCNSSS^+ß (1²⁺) is the same in all four structures and consists of two 7π rings linked by a sp²-sp² C-C bond (1.462 Å in 1 (AsF₆)₂). The packing in the four structures is similar with stacks of dications along the a-axis and alternating sheets of dications and anions lying in the bc-plane. The differences in the dication-dication contacts is reflected in the variable temperature magnetic data.     

The effects of collision energy, vibrational mode, and vibrational angular momentum on energy transfer and dissociation in NO2+-rare gas collisions: an experimental and trajectory study

A combined experimental and trajectory study of vibrationally state-selected NO2+ collisions with Ne, Ar, Kr, and Xe is presented. Ne, Ar, and Kr are similar in that only dissociation to the excited singlet oxygen channel is observed; however, the appearance energies vary by approximately 4 eV between the three rare gases, and the variation is nonmonotonic in rare gas mass. Xe behaves quite differently, allowing efficient access to the ground triplet state dissociation channel. For all four rare gases there are strong effects of NO2+ vibrational excitation that extend over the entire collision energy range, implying that vibration influences the efficiency of collision to internal energy conversion. Bending excitation is more efficient than stretching; however, bending angular momentum partially counters the enhancement. Direct dynamics trajectories for NO2+ + Kr reproduce both the collision energy and vibrational state effects observed experimentally and reveal that intracomplex charge transfer is critical for the efficient energy transfer needed to drive dissociation. The strong vibrational effects can be rationalized in terms of bending, and to a lesser extent, stretching distortion enhancing transition to the Kr+ -NO2 charge state.     

'Pincer' pyridine dicarbene complexes of nickel and their derivatives. Unusual ring opening of a coordinated imidazol-2-ylidene

The reaction of NiBr2(DME), DME = 1,2-dimethoxyethane, with the pincer pyridine dicarbene ligands (C-N-C) ( 2) and (C-NMe-C) ( 2Me), (C-N-C = 2,6-bis-[(DiPP)imidazol-2-ylidene]pyridine, C-NMe-C = 2,6-bis-[(DiPP)imidazol-2-ylidene]-3,5-dimethylpyridine, DiPP = 2,6-diisopropylphenyl) gave the square planar complexes [Ni(C-N(Me)-C)Br]Br, 3.( Br)- and 3Me.( Br)- respectively. Transmetallation from [(C-NMe-C)2Ag2](Ag6I8), 6Me.( Ag6 I8)2- to NiBr2(DME) gave [Ni(C-NMe-C)Br](AgI2), 3Me.( AgI2)-. Reaction of 3.( Br)- with KPF6 resulted only in exchange of the ionic bromide, however the reaction of 3.( Br)- with AgBF4 in MeCN or AgOTf in THF resulted in the exchange of both coordinated and ionic bromides, giving rise to the square planar 4.( BF4)-2 and octahedral 5, respectively. In contrast, the reaction of 3Me.( AgI2)-, with excess AgOTf resulted in an unusual reverse transmetallation leading to 6Me.( OTf)-. The substitution of tmeda in Ni(CH3)2(tmeda), tmeda = N,N,N,N-tetramethylethylenediamine, by 2 produced the complex 7, in which ring opening of the heterocyclic imidazole ring of one of the NHC functional groups has taken place.     

Stepwise modification of titanium alkoxy chloride compounds by pyridine carbinol

The stepwise modifications of stoichiometric mixtures of titanium chloride (TiCl 4) and titanium iso-propoxide (Ti(OPr (i)) 4) by 2-pyridine methanol (H-OPy) led to the isolation of a systematically varied, novel family of compounds. The 3:1 reaction mixture of Ti(OPr (i)) 4:TiCl 4 yielded [Cl(OPr (i)) 2Ti(mu-OPr (i))] 2 ( 1). Modification of 1 with 1 and 2 equiv of H-OPy produced [Cl(OPr (i)) 2Ti(mu c-OPy)] 2 ( 2, where mu c = chelating bridge) and "(OPy) 2TiCl(OPr (i))" ( 3, not crystallographically characterized), respectively. Altering the Ti(OPr (i)) 4 to TiCl 4 stoichiometry to 1:1 led to isolation and identification of another dimeric species [Cl 2(OPr (i))Ti(mu-OPr (i))] 2 ( 4). Upon modification with 1 equiv of H-OPy, [Cl 2(OPr (i))Ti(mu c-OPy)] 2 ( 5) was isolated from toluene and (OPy)TiCl 2(OPr (i))(py) ( 6) from py. An additional equivalent of H-OPy led to the monomeric species (OPy) 2TiCl 2 ( 7). Because of the low solubility and similarity in constructs of these compounds, additional analytical data, such as the beryllium dome or BeD-XRD powder analyses, were used to verify the bulk samples, which were found to be in agreement with the single crystal structures.     

Characterization of a miniature, ultra-high-field, ion mobility spectrometer

By combining a multiple micron-gap ion separator with a novel high-frequency separation waveform drive topology, it has been possible to considerably extend the separation field limits employed in Field Asymmetric Ion Mobility Spectrometry (FAIMS)/Differential Mobility Spectrometry (DMS); giving rise to an Ultra-High-Field operational domain. A miniature spectrometer, based around the multi-micron-gap ion separator and ultra-high-field drivers, has been developed to meet the continuing industrial need for sensitive (sub-ppm), broadband and fast (second timescale) response volatile chemical detection. The packaged miniature spectrometer measures 12?×?12?×?15?cm, weighs 1.2?kg and is fully standalone; consisting of the core multi-micron gap ion separator assembly and RF/DC electronic drivers integrated with pneumatic handling/sample conditioning elements, together with ancillary temperature, flow and humidity sensing for stable closed loop operation (under local microprocessor control). The combination of multiple micron-gap ion separators with the novel high-frequency separation waveform drive topology enables ion separations to be performed over scanning electric field ranges of 0 to >75?kV·cm^?1 (0 to >??320 Td at 101?kPa), offering a potential solution to trace and ultra-trace chemical detection/monitoring problems, that conventional IMS and DMS/FAIMS may otherwise find challenging. In this ultra-high field operational regime effective ion temperatures may be ??swept?? from ambient to >1000 K because critically, the effective ion temperature scales to at least the square of the applied field. With this field induced ion heating a controlled manipulation (or switching) of the ion chemistry within the separation channel (the ion drift region) may be invoked. For example, ion fragmentation via thermal dissociation can be induced. Chemical separation and identification is thus derived from the unique kinetic and thermodynamic behavior of ions assessed over a very broad effective temperature range. In addition to describing the novel miniature spectrometer, this paper addresses key aspects of ultra-high-field operation, which render it distinct from traditional ion mobility technologies and principles. In particular, this paper essays a model of ultra-high-field operation and highlights model deviations, whilst providing clear theoretical explanation backed up with experimental evidence.     

H+ versus D+) transfer from HOD+ to N2: mode- and bond-selective effects

Reactions of HOD(+) with N(2) have been studied for HOD(+) in its ground state and with one quantum of excitation in each of its vibrational modes: (001)--predominately OH stretch, 0.396 eV, (010)--bend, 0.153 eV, and (100)--predominately OD stretch, 0.293 eV. Integral cross sections and product recoil velocities were recorded for collision energies from threshold to 4 eV. The cross sections for both H(+) and D(+) transfer rise slowly from threshold with increasing collision energy; however, all three vibrational modes enhance reaction much more strongly than equivalent amounts of collision energy and the enhancements remain large even at high collision energy, where the vibration contributes less than 10% of the total energy. Excitation of the OH stretch enhances H(+) transfer by a factor of ～5, but the effect on D(+) transfer is only slightly larger than that from an equivalent increase in collision energy, and smaller than the effect from the much lower energy bend excitation. Similarly, OD stretch excitation strongly enhances D(+) transfer, but has essentially no effect beyond that of the additional energy on H(+) transfer. The effects of the two stretch vibrations are consistent with the expectation that stretching the bond that is broken in the reaction puts momentum in the correct coordinate to drive the system into the exit channel. From this perspective it is quite surprising that bend excitation also results in large (factor of 2) enhancements of both H(+) and D(+) transfer channels, such that its effect on the total cross section at collision energies below ～2 eV is comparable to those from the two stretch modes, even though the bend excitation energy is much smaller. For collision energies above ～2 eV, the vibrational effects become approximately proportional to the vibrational energy, though still much larger than the effects of equivalent addition of collision energy. Measurements of the product recoil velocity distributions show that reaction is direct at all collision energies, with roughly half the products in a sharp peak corresponding to stripping dynamics and half with a broad and approximately isotropic recoil velocity distribution. Despite the large effects of vibrational excitation on reactivity, the effects on recoil dynamics are small, indicating that vibrational excitation does not cause qualitative changes in the reaction mechanism or in the distribution of reactive impact parameters.     

Structural diversity in solvated lithium aryloxides. Syntheses, characterization, and structures of [Li(OAr)(THF)x]n and [Li(OAr)(py)x]2 complexes where OAr = OC6H5, OC6H4(2-Me), OC6H3(2,6-(Me))2, OC6H4(2-Pr(i)), OC6H3(2,6-Pr(i)))2, OC6h4(2-Bu(t)), OC6H3(2,6-Bu(t)))2

A series of sterically varied aryl alcohols H-OAr [OAr = OC6H5 (OPh), OC6H4(2-Me) (oMP), OC6H3(2,6-(Me))2 (DMP), OC6H4(2-Pr(i)) (oPP), OC6H3(2,6-(Pr(i)))2 (DIP), OC6H4(2-Bu(t)) (oBP), OC6H3(2,6-(Bu(t)))2 (DBP); Me = CH3, Pr(i) = CHMe2, and Bu(t) = CMe3] were reacted with LiN(SiMe3)2 in a Lewis basic solvent [tetrahydrofuran (THF) or pyridine (py)] to generate the appropriate "Li(OAr)(solv)x". In the presence of THF, the OPh derivative was previously identified as the hexagonal prismatic complex [Li(OPh)(THF)]6; however, the structure isolated from the above route proved to be the tetranuclear species [Li(OPh)(THF)]4 (1). The other "Li(OAr)(THF)x" products isolated were characterized by single-crystal X-ray diffraction as [Li(OAr)(THF)]4 [OAr = oMP (2), DMP (3), oPP (4)], [Li(DIP)(THF)]3 (5), [Li(oBP)(THF)2]2, (6), and [Li(DBP)(THF)]2, (7). The tetranuclear species (1-4) consist of symmetric cubes of alternating tetrahedral Li and pyramidal O atoms, with terminal THF solvent molecules bound to each metal center. The trinuclear species 5 consists of a six-membered ring of alternating trigonal planar Li and bridging O atoms, with one THF solvent molecule bound to each metal center. Compound 6 possesses two Li atoms that adopt tetrahedral geometries involving two bridging oBP and two terminal THF ligands. The structure of 7 was identical to the previously reported [Li(DBP)(THF)]2 species, but different unit cell parameters were observed. Compound 7 varies from 6 in that only one solvent molecule is bound to each Li metal center of 7 because of the steric bulk of the DBP ligand. In contrast to the structurally diverse THF adducts, when py was used as the solvent, the appropriate "Li(OAr)(py)x" complexes were isolated as [Li(OAr)(py)2]2 (OAr = OPh (8), oMP (9), DMP (10), oPP (11), DIP (12), oBP (13)) and [Li(DBP)(py)]2 (14). Compounds 8-13 adopt a dinuclear, edge-shared tetrahedral complex. For 14, because of the steric crowding of the DBP ligand, only one py is coordinated, yielding a dinuclear fused trigonal planar arrangement. Two additional structure types were also characterized for the DIP ligand: [Li(DIP)(H-DIP)(py)]2 (12b) and [Li2(DIP)2(py)3] (12c). Multinuclear (6,7Li and 13C) solid-state MAS NMR spectroscopic studies indicate that the bulk powder possesses several Li environments for "transitional ligands" of the THF complexes; however, the py adducts possess only one Li environment, which is consistent with the solid-state structures. Solution NMR studies indicate that "transitional" compounds of the THF precursors display multiple species in solution whereas the py adducts display only one lithium environment.