Product distribution of peroxynitrite decay as a function of pH, temperature, and concentration.

The decay of peroxynitrite [O=NOO(-), oxoperoxonitrate(1-)] was examined as a function of concentration (0.050-2.5 mM), temperature (5-45 degrees C), and pH (2.2-10.0). Below 5 degrees C and pH 7, little amounts of the decomposition products nitrite and dioxygen are formed, even when the peroxynitrite concentration is high (2.5 mM). Instead, approximately > or =90% isomerizes to nitrate. At higher pH, decomposition increases at the expense of isomerization, up to nearly 80% at pH 10.0 at 5 degrees C and 90% at 45 degrees C. Much less nitrite and dioxygen per peroxynitrite are formed when the peroxynitrite concentration is lower; at 50 microM and pH 10.2, < or =40% decomposes. In contrast to two other reports (Pfeiffer, S.; Gorren, A. C. F.; Schmidt, K.; Werner, E. R.; Hansert, B.; Bohle, D. S.; Mayer, B. J. Biol. Chem. 1997, 272, 3465-3470, and Coddington, J. W.; Hurst, J. K.; Lymar, S. V. J. Am. Chem. Soc. 1999, 121, 2438-2443), we find that the extent of decomposition is dependent on the peroxynitrite concentration.     

Synthesis and characterization of a magnetic semiconductor Na(2)RuO(4) containing one-dimensional chains of Ru(6+)

A new ternary ruthenium oxide Na(2)RuO(4) was prepared and shown to crystallize with a new structure type. Single crystal X-ray diffraction measurements reveal that Na(2)RuO(4) consists of RuO(4) chains made up of RuO(5) trigonal bipyramids by sharing axial corners. Na(2)RuO(4) is a magnetic semiconductor with a variable range hopping behavior, and its molar magnetic susceptibility chi(mol) has a broad maximum at approximately 74 K. The derivative d(chi(mol).T)/dT exhibits a peak at 37.7 K which has been confirmed by heat capacity measurement to be due to long-range antiferromagnetic ordering.     

Fundamental Aspects of Ionic Dissociations: The Fragmentation Pathways of Excited Bicyclobutane Cations

A most recently developed method to quantify the fragmentation pathways of excited radical cations is presented. Using bicyclobutane cation as an illustrative example, the RRKM analysis of the breakdown diagram determined by He-Iα photoelectron-photoion coincidence spectroscopy is outlined. The results imply complete isomerization to 1,3-butadiene cation preceding the dissociative processes. The rate-energy functions of four competitive primary fragmentation reactions, leading to C₃H, C₄H, C₄H and C₂H are established. There is compelling evidence that the production of C₂H fragment ions does not compete effectively with these four reactions. The extent of kinetic and competitive shift effects is determined. The derived enthalpies of formation are in excellent accord with the available high quality reference data. The relative importance of different fragmentation pathways which ultimately lead to fragment ions of identical mass to charge ratio is assessed.     

Structural transformation of molecular nitrogen to a single-bonded atomic state at high pressures

The transformation of molecular nitrogen to a single-bonded atomic nitrogen is of significant interest from a fundamental stand point and because it is the most energetic non-nuclear material predicted. We performed an x-ray diffraction of nitrogen at pressures up to 170 GPa. At 60 GPa, we found a transition from the rhombohedral (R3c) epsilon-N(2) phase to the zeta-N(2) phase, which we identified as orthorhombic with space group P222(1) and with four molecules per unit cell. This transition is accompanied by increasing intramolecular and decreasing intermolecular distances. The major transformation of this diatomic phase into the single-bonded (polymeric) phase, recently determined to have the cubic gauche structure (cg-N), proceeds as a first-order transition with a volume change of 22%.     

Stable conformations of tripeptides in aqueous solution studied by UV circular dichroism spectroscopy

Determination of the precise solution structure of peptides is of utmost importance to the understanding of protein folding and peptide drugs. Herein, we have measured the UV circular dichroism (UVCD) spectra of tri-alanine dissolved in D(2)O, H(2)O, and glycerol. The results clearly show the coexistence of a polyproline II or 3(1)-helix and a somewhat disordered flat beta-strand conformation, in complete agreement with recent predictions from spectroscopic data (Eker et al. J. Am. Chem. Soc. 2002, 124, 14 330-14 341). A thermodynamic analysis revealed that enthalpic contributions of about 11 and 17 kJ/mol stabilize polyproline II in D(2)O and H(2)O, respectively, but at room temperature they are counterbalanced by entropic contributions, which clearly favor the more disordered beta-strand conformation. It is hypothesized that this delicate balance is the reason for the variety of structural propensities of amino acid residues in the absence of nonlocal interactions. The isotope effect yielding a higher occupation of polyproline II in H(2)O with respect to D(2)O strongly suggests that a hydrogen-bonding network involving the peptide and water molecules in the hydration shell plays a major role in stabilizing this conformation. The equilibrium between polyproline II and beta-strand is practically maintained in glycerol, which suggests that glycerol can substitute water as stabilizing solvent for the polyproline II conformation. We also measured the UVCD spectra of tri-valine and tri-lysine (both at acidic pD) in D(2)O and found them to adopt a flat beta-strand and left-handed turn structure, respectively, in accordance with recent analyses of vibrational spectroscopy data. Generally, the present study adds substantial evidence to the notion that the so-called random coil state of peptides is much more structured than generally assumed.     

Polyhedral clathrate hydrates of a strong base: Phase relations and crystal structures in the system tetramethylammonium hydroxide-water

The tetramethylammonium hydroxide-water system has been studied by low-temperature differential thermal analysis and X-ray powder diffraction. The melting diagram was constructed for concentrations between 66.7 and 100 mol% H₂O. It shows the existence and stability ranges of as many as eight crystalline hydrate phases:- and-Me₄NOH·2H₂O (phase transition at –85°C, decomposition atca. 105°C), Me₄NOH·4 H₂O (melting point 44°C, incongruent), and-Me₄NOH·5 H₂O (phase transition at 42°C, melting point 68°C, congruent),- and-Me₄NOH·7.5 H₂O (phase transition at 6°C, melting point 16°C, incongruent), and Me₄NOH·10 H₂O (melting point –20°C, incongruent). The structures of all these phases, except the already known one of-Me₄NOH·5 H₂O, were determined from single-crystal MoK diffractometer data. The decahydrate and the high-temperature forms of the 7.5-hydrate and the pentahydrate are genuinepolyhedral clathrate hydrates, the first ones reported of a strong base. Their mostly novel three-dimensional anionic host structures, formed by the hydrogen-bonded OH^– ions and H₂O molecules, arefour-connected throughout, in spite of their proton deficiency which is apparently leveled by disorder. Disorder also affects the enclosed cationic Me₄N⁺ guest species. Like the low-temperature form of the pentahydrate, that of the 7.5-hydrate has a clathrate-related, but not fully polyhedral structure, some of the oxygen atoms being three-connected only. The tetrahydrate presents the rare case of both a hydrogen bond of the type OH^–...OH₂ and a (deprotonated) water-channel structure. This is fully ordered and apart from that can be derived from the polyhedral one of the-pentahydrate just by removing the appropriate number of water molecules from certain positions. The structures of- and-Me₄NOH·2 H₂O contain identical one-dimensionalspiro chains [HO^–(HOH)_/42] with the hydroxide protonnot participating in the hydrogen bonding. The Me₄N⁺ ion is ordered in the and disordered in the phase.Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82076 (66 pages).Dedicated to Dr D. W. Davidson in honor of his great contributions to the sciences of inclusion phenomena.     

Observation of two diffusive relaxation modes in microemulsions by dynamic light scattering

Water-in-oil microemulsions stabilized by AOT and dispersed in n-alkane oils with a constant molar water-to-surfactant ratio were studied by dynamic light scattering. A dilution series (in the range of volume fraction of water plus surfactant, phi approximately 0.02-0.52) was used, which allowed us to extract information about droplet sizes, diffusion coefficients, interactions, and polydispersity from experimental data. We report the observation of two diffusive relaxation modes in a concentrated microemulsion (0.20 < phi < 0.5) due to density (collective diffusion) and concentration or polydispersity (self-diffusion) fluctuations. Below this concentration it was difficult to resolve two exponentials unambiguously, and in this case one apparent relaxation mode was observed. It was found that for a given composition self-diffusion is more pronounced in apparent relaxation mode for a shorter chain length alkane. The concentration dependence of these diffusion coefficients reflects the effect of hard sphere and the supplementary attractive interactions. It was observed that the attractive part becomes more pronounced in the case of a large alkane chain oil at a given temperature. This explains the shift of the region of microemulsion stability to lower temperatures for higher chain length alkanes. Increase in hydrodynamic radius, Rh, obtained from the diffusion coefficient extrapolated to infinite dilution was observed with increase of alkane chain length. The polydispersity in microemulsion systems is dynamic in origin. Results indicate that the time scale for local polydispersity fluctuations is at least 3 orders of magnitude longer than the estimated time between droplet collisions.     

Simultaneous acquisition of X-ray spectra using a multi-wire, position-sensitive gas flow detector

A multi-wire, gas-filled position-sensitive detector has been developed for the simultaneous recording of wavelength-dispersed X-ray signals that enables X-ray fluorescence spectrometry with a limited multi-element capability in the low Z element range. Details of the modular construction of the detector are given. The detector performance was characterized using Al–K radiation and a variable slit system. The detector has been applied in a laboratory spectrometer equipped with an electron source and a double multilayer mirror device as the wavelength-dispersing element. Spectra from Al and Si obtained in the simultaneous acquisition mode show good agreement with calculations performed using a ray-tracing model.