Substituent effects on the reductions of quinoline-N-boranes

Reductions of 2-substituted quinoline-$\text{N}$-boranes by sodium bis-(2-methoxyethoxy)aluminum dihydride lead to 1,2,3,4-tetrahydroquinolines by hydride attack at C-4 and subsequent reduction of the resulting enamine.     

Instructions for Authors

Instructions for Authors

Instructions for Authors     

Substrate specificity and novel selective inhibitors of TNF-alpha converting enzyme (TACE) from two-dimensional substrate mapping

We report a systematic analysis of the P1' and P2' substrate specificity of TNF-alpha converting enzyme (TACE) using a peptide library and a novel analytical method, and we use the substrate specificity information to design novel reverse hydroxamate inhibitors. Initial truncation studies, using the amino acid sequence around the cleavage site in precursor-TNF-alpha, showed that good turnover was obtained with the peptide DNP-LAQAVRSS-NH2. Based on this result, 1000 different peptide substrates of the form Biotin-LAQA-P1'-P2'-SSK(DNP)-NH2 were prepared, with 50 different natural and unnatural amino acids at P1' in combination with 20 different amino acids at P2'. The peptides were pooled, treated with purified microsomal TACE, and the reaction mixtures were passed over a streptavidin affinity column to remove unreacted substrate and the N-terminal biotinylated product. C-terminal cleavage products not binding to streptavidin were subjected to liquid chromatography/mass spectrometry analysis where individual products were identified and semiquantitated. 25 of the substrates were resynthesized as discrete peptides and assayed with recombinant TACE. The experiments show that recombinant TACE prefers lipophilic amino acids at the P1' position, such as phenylglycine, homophenylalanine, leucine and valine. At the P2' position, TACE can accommodate basic amino acids, such as arginine and lysine, as well as certain non-basic amino acids such as citrulline, methionine sulfoxide and threonine. These substrate preferences were used in the design of novel reverse hydroxamate TACE inhibitors with phenethyl and 5-methyl-thiophene-methyl side-chains at P1', and threonine and nitro-arginine at P2'.     

Hall-velocity limited magnetoconductivity in a 2D Wigner solid

The magnetoconductivity σ(B) of a classical 2D electron crystal on superfluid⁴He is non-linear. Experimentally we find a contribution to σ(B) which at constant field, gives σ(B)∞J _x, the current density, while at constant current, σ(B) ∞ 1/B. In this region the Hall velocity ν_H slowly approaches the ripplon velocity ν_I at the first reciprocal lattice vector, due to strong electron-ripplon interactions with the helium. The magnetoconductivity decreases sharply for ν_H>ν_I. Fluctuations in σ(B) are seen above the melting temperature.     

Anionic charge is prioritized over geometry in aluminum and magnesium fluoride transition state analogs of phosphoryl transfer enzymes

Phosphoryl transfer reactions are ubiquitous in biology and metal fluoride complexes have played a central role in structural approaches to understanding how they are catalyzed. In particular, numerous structures of AlFx-containing complexes have been reported to be transition state analogs (TSAs). A survey of nucleotide kinases has proposed a correlation between the pH of the crystallization solution and the number of coordinated fluorides in the resulting aluminum fluoride TSA complexes formed. Enzyme ligands crystallized above pH 7.0 were attributed to AlF3, whereas those crystallized at or below pH 7.0 were assigned as AlF4-. We use 19F NMR to show that for beta-phosphoglucomutase from Lactococcus lactis, the pH-switch in fluoride coordination does not derive from an AlF4- moiety converting into AlF3. Instead, AlF4- is progressively replaced by MgF3- as the pH increases. Hence, the enzyme prioritizes anionic charge at the expense of preferred native trigonal geometry over a very broad range of pH. We demonstrate similar behavior for two phosphate transfer enzymes that represent typical biological phosphate transfer catalysts: an amino acid phosphatase, phosphoserine phosphatase from Methanococcus jannaschii and a nucleotide kinase, phosphoglycerate kinase from Geobacillus stearothermophilus. Finally, we establish that at near-physiological ratios of aluminum to magnesium, aluminum can dominate over magnesium in the enzyme-metal fluoride inhibitory TSA complexes, and hence is the more likely origin of some of the physiological effects of fluoride.     

The analytical utility of thermally desorbed polydimethylsilicone membranes for in-vivo sampling of volatile organic compounds in and on human skin

A thermally-desorbed polydimethylsilicone (PDMS) membrane approach with analysis by gas chromatography-mass spectrometry has been developed and characterised, to enable the VOC arising in, and on skin, from glandular secretions, exogenous materials, products of perfusion from blood, and microbiological metabolites to be sampled in a single procedure. In-vitro studies using a series of volatile fatty acid standards indicated that the recovery efficiency of the technique increased with decreasing volatility; for example, the recovery of hexanoic acid was 3.3 times greater than that for 2-methylpropanoic acid. The relative standard deviation of the methodology decreased with decreasing volatility; RSD = 19% for 2-methylpropanoic acid and RSD = 7% for hexanoic acid. Sampled-mass vs. response relationships were modelled satisfactorily using linear regression analysis with regression coefficients in the range 0.95 to 0.998. In-vivo reproducibility was assessed though the analysis of the responses of 1-dodecane, 3,7-dimethyloct-1-ene, 2-propenoic acid, 2-ethylhexyl ester, 2-ethylhexan-1-ol, butanoic, 2-ethylhexylester, and junipen (1,4-methanoazulene, decahydro-4,8,8-trimethyl-9-methylene-); six compounds selected at random retention times from a GC-MS chromatographic VOC profile of human skin containing several hundred resolved and partially resolved compounds. Five samples were obtained simultaneously from the forearm of a healthy male participant. The in-vivo sample masses were estimated to be in the range 50 pg to 100 ng per sample with observed RSD falling between 15% and 32%; in line with a Horwitz trend. Increasing the sample time from 5 min to 120 min generally resulted in an enrichment of the VOC recovered, and for many VOC substantial increases in sensitivity (x7) were observed over this time range as the PDMS sampling-patch approached equilibrium with the underlying skin. Nevertheless, more volatile components, 2,4,6-trimethylcarbazole for instance, were observed to be lost from the analysis with increasing sample time, in a manner analogous with breakthrough behaviour in adsorbent traps. Finally, a 10 day storage study at 4 degrees C suggested that micro-biological factors were significant in their effect on sample stability. Significant changes (up to x8) were observed in the masses of compounds recovered post storage. These studies confirmed that polydimethylsilicone membrane sampling patches of human skin provide rich and analytical useful data. It is important to note that care in experimental design is needed to avoid sampling artefacts being introduced through sampling selectivity, and/or, sample instability where samples are stored for longer than 24 h at 4 degrees C or higher.     

Neutron scattering study of the excitation spectrum of solid helium at ultra-low temperatures

There has been a resurgence of interest in the properties of solid helium due to the recent discovery of non-classical rotational inertia (NCRI) in solid ⁴He by Chan and coworkers below 200 mK which they have interpreted as a transition to a ‘supersolid’ phase. We have carried out a series of elastic and inelastic neutron scattering measurements on single crystals of hcp ⁴He at temperatures down to 60 mK. While we have found no direct evidence of any change in the excitation spectrum at low temperatures, we have found that the excitation spectrum of solid ⁴He shows several interesting features, including extra branches in addition to the phonon branches. We interpret these extra branches as single particle excitations due to propagating vacancy waves, which map on to the famous ‘roton minimum’ long known in the excitation spectrum of superfluid liquid ⁴He. The results show that in fact solid ⁴He shares several features in common with the superfluid.      

Characterization of femtomole levels of proteins in solution using rapid proteolysis and nanoelectrospray ionization mass spectrometry

A method for the rapid proteolytic digestion of low picomole to low femtomole amounts of proteins in solution using a capillary immobilized protease column is presented. Dilute protein samples are passed through a “μ-digestion” column packed with Poroszyme^? immobilized trypsin for generation of proteolytic fragments in less than 10 min. After digestion, nanoelectrospray ionization mass spectrometry (NanoES) is used to generate a peptide map, and peptides of interest are subjected to MS/MS from the same sample. By digesting only 100 fmol of the protein src kinase and 30 fmol of the protein lck kinase with a tryptic μ-digestion column, we obtained sufficient data from NanoES-MS and MS/MS to unambiguously identify both proteins using database searching. This approach was also used to locate a phosphorylation site on lck kinase starting with only 300 fmol of protein. The method was successfully used to identify an E. coli cold shock protein in a fraction collected from a two-dimensional HPLC separation of an E. coli cell lysate. The μ-digestion column was found to be less susceptible to adsorptive losses than solution digests, thus allowing for digestion and enhanced recovery of peptides from even low fmol amounts of protein in solution.     

Probe rotation near and below the glass transition temperature: Relationship to viscoelasticity and physical aging

Reorientation times ť_c for two probes in several amorphous polymers near the glass transition temperature T_g are reported. T_g for these polymers ranges from 205 to 459 K. Probe reorientation was measured in the time window from 10⁻² to 10⁴ s with a recently developed photobleaching method. ť_c for a given probe at the T_gs of the different polymers varies more than three decades. Viscoelastic relaxation times characteristic of the Rouse modes of the matrix polymers are closely related to probe rotation times and thus also not constant at T_g. The characteristic length scale of motions responsible for the glass transition varies significantly for the three polymers studied. Preliminary physical aging results indicate that probe reorientation in polystyrene ages slightly faster than the volume.