Polydiacetylene nanowires in ultrathin films

In this paper the results of studies carried out on thin films of new poly[bis(carbazol-9-ylmethyl)diacetylene]s (PCDAs) are reported. The preparation of the films has required clever synthesis to make processable the conjugated polymers without degrading their optoelectronic properties. To this end, the parent poly(diacetylene), (polyDCHD), has been modified by introducing long alkyl or acyl chains in the 3 and 6 positions of the carbazole rings. Electronic absorption spectra and linear and nonlinear optical characterization of three types of PCDAs are reported and compared.     

Synthesis,Biological Evaluation and Docking Studies of Ring-Opened Analogues of Ipomoeassin F

The plant-derived macrocyclic resin glycoside ipomoeassin F (Ipom-F) binds to Sec61α and significantly disrupts multiple aspects of Sec61-mediated protein biogenesis at the endoplasmic reticulum, ultimately leading to cell death. However, extensive assessment of Ipom-F as a molecular tool and a therapeutic lead is hampered by its limited production scale, largely caused by intramolecular assembly of the macrocyclic ring. Here, using in vitro and/or in cellula biological assays to explore the first series of ring-opened analogues for the ipomoeassins, and indeed all resin glycosides, we provide clear evidence that macrocyclic integrity is not required for the cytotoxic inhibition of Sec61-dependent protein translocation by Ipom-F. Furthermore, our modeling suggests that open-chain analogues of Ipom-F can interact with multiple sites on the Sec61α subunit, most likely located at a previously identified binding site for mycolactone and/or the so-called lateral gate. Subsequent in silico-aided design led to the discovery of the stereochemically simplified analogue 3 as a potent, alternative lead compound that could be synthesized much more efficiently than Ipom-F and will accelerate future ipomoeassin research in chemical biology and drug discovery. Our work may also inspire further exploration of ring-opened analogues of other resin glycosides.     

Bridging the Gap in Malaria Parasite Resistance,Current Interventions,and the Way Forward from in Silico Perspective: A Review

The past decade has seen most antimalarial drugs lose their clinical potency stemming from parasite resistance. Despite immense efforts by researchers to mitigate this global scourge, a breakthrough is yet to be achieved, as most current malaria chemotherapies suffer the same fate. Though the etiology of parasite resistance is not well understood, the parasite’s complex life has been implicated. A drug-combination therapy with artemisinin as the central drug, artemisinin-based combination therapy (ACT), is currently the preferred malaria chemotherapy in most endemic zones. The emerging concern of parasite resistance to artemisinin, however, has compromised this treatment paradigm. Membrane-bound Ca²⁺-transporting ATPase and endocytosis pathway protein, Kelch13, among others, are identified as drivers in plasmodium parasite resistance to artemisinin. To mitigate parasite resistance to current chemotherapy, computer-aided drug design (CADD) techniques have been employed in the discovery of novel drug targets and the development of small molecule inhibitors to provide an intriguing alternative for malaria treatment. The evolution of plasmepsins, a class of aspartyl acid proteases, has gained tremendous attention in drug discovery, especially the non-food vacuole. They are expressed at multi-stage of the parasite’s life cycle and involve in hepatocytes’ egress, invasion, and dissemination of the parasite within the human host, further highlighting their essentiality. In silico exploration of non-food vacuole plasmepsin, PMIX and PMX unearthed the dual enzymatic inhibitory mechanism of the WM382 and 49c, novel plasmepsin inhibitors presently spearheading the search for potent antimalarial. These inhibitors impose structural compactness on the protease, distorting the characteristic twist motion. Pharmacophore modeling and structure activity of these compounds led to the generation of hits with better affinity and inhibitory prowess towards PMIX and PMX. Despite these headways, the major obstacle in targeting PM is the structural homogeneity among its members and to human Cathepsin D. The incorporation of CADD techniques described in the study at early stages of drug discovery could help in selective inhibition to augment malaria chemotherapy.     

In‐Operando Mapping of pH Distribution in Electrochemical Processes

In aqueous electrochemical processes, the pH evolves spatially and temporally, and often dictates the process performance. Herein, a new method for the in‐operando monitoring of pH distribution in an electrochemical cell is demonstrated. A combination of pH‐sensitive fluorescent dyes, encompassing a wide pH range from ≈1.5 to 8.5, and rapid electrochemically coupled laser scanning confocal microscopy is used to observe pH changes in the cell. Using electrocoagulation as an example process, we show that the method provides new insights into the reaction mechanisms. The pH close to the aluminium electrode surface is influenced by the applied current density, hydrolysis of aluminium cations, and gas evolution. Through quantification of the pH at the anode, along with gas analysis, we find that hydrogen is evolved at the anode due to a non‐Faradaic chemical reaction. This leads to increased production of coagulant, which may open new routes to enhance the process performance. This method for in‐operando dynamic visualization of pH paves the way for studies of electrochemical processes, including other water treatment, electrosynthesis, and batteries.     

SERS Investigation on the Polymerization of Carbazolyl-diacetylene Monolayers on Gold Surfaces

Surface Enhanced Raman Scattering experiments were performed on self-assembled carbazolyl-diacetylene monolayers chemisorbed on smooth gold substrates and UV irradiated. The Raman enhancement was ensured by depositing silver colloidal nanoparticles, which strongly increase the surface roughness. The co-existence of two polymer phases, characterized by different degree of order in the polymeric backbone, was detected by SERS results, which suggest a polymerization scheme with conjugated triple bonds nearly parallel to the plane of the metal surface.     

Capillary electrophoresis investigation of a partially unfolded conformation of beta(2)-microglobulin

Dialysis-related amyloidosis is a disease in which partial unfolding of beta(2)-microglobulin plays a key pathogenetic role in the formation of the amyloid fibrils. We have recently demonstrated that a partially unfolded conformer of beta(2)-microglobulin is involved in fibrillogenesis and that this species is significantly populated under physiological conditions. In this work capillary electrophoresis has been used to measure the equilibrium between the native protein and this conformer in samples known to have a higher or lower amyloidogenic potential, namely full-length beta(2)-microglobulin, two truncated species and a mutant, created by replacing histidine in position 31 with thyrosine. In addition, for all protein species folding stability experiments have been carried out by monitoring the secondary structure by circular dichroism at increasing concentrations of guanidinium chloride. The values of free energy of unfolding in the absence of denaturant, obtained by elaboration of these experiments, were found to be inversely correlated to the area percent of the partially unfolded conformer, as measured by capillary electrophoresis. Affinity capillary electrophoresis experiments have been also carried out under nondenaturing conditions to assess the affinity of copper and suramin to either the native form or the conformational intermediate of full-length beta(2)-microglobulin.     

Photopolymerization in water of diacetylenes chemisorbed onto noble metal nanoparticles: a spectroscopic study

Gold and silver nanoparticles of different size, decorated by a diacetylenic monomer having a COOH anchor group, were prepared in aqueous dispersions. Topochemical polymerization of the colloidal suspensions was obtained by UV irradiation and studied by means of spectroscopic techniques (UV–visible absorption, IR and Raman spectroscopies). A variety of polymer phases were found in the case of silver nanohybrids. The main contribution for this investigation was supplied by the Raman spectra, which provide detailed information on the polymer forms and on the preferred conformation of the alkylic side chains. Copyright © 2009 John Wiley & Sons, Ltd.     

Stable gold nanoparticles obtained in pure acetone by laser ablation with different wavelengths

We prepared gold nanoparticles (NPs) by ps laser ablation in pure acetone and water with 532 and 1,064 nm wavelengths. The NPs obtained in pure acetone are stable for years and, depending on the fabrication conditions, they can be very small, quasi monodisperse and fluorescent. These properties are not lost when they are transferred from acetone to water. Post-irradiation tests of the colloids with 532 nm pulses, before and after phase transfer to water, and surface enhanced Raman spectroscopy (SERS), either on liquid and on dried samples, suggest that the stabilization mechanism in acetone is related to the light-induced formation on the gold surface of enolate which, in some cases, can undergo degradation with formation of amorphous carbon. Micro-SERS tests were also used to demonstrate that functionalization of the particles with 1,10-phenanthroline or adenine is possible after transfer to the water phase, which opens the way to the use of such structures for biological and medical applications, such as biocompatible fluorescent or Raman markers.     

Residual properties of pre-bipartite digraphs

We say that a directed graph is pre-bipartite if its symmetric closure is bipartite. We will show that the class ${\mathcal{B}}$ of all pre-bipartite digraphs containing no cycles is a universal Horn class. Let ${\mathcal{U}}$ be a universal Horn class contained in ${\mathcal{B}}$ . We determine when it is possible to axiomatise, by first-order sentences, the class ${\mathcal{R}_{\rm CT}(\mathcal{U}_{\rm fin})}$ of compact topological digraphs that are topologically residually in the class of finite members of ${\mathcal{U}}$ . We show that if ${\mathcal{R}_{\rm CT}(\mathcal{U}_{\rm fin})}$ is axiomatisable by first-order sentences, then it is axiomatisable by universal Horn sentences.     

Intercalation of iron(III) hexacyano complex in a Ni,Al hydrotalcite-like compound

The product obtained by the intercalation of hexacyanoferrate(III) inside a Ni, Al hydrotalcite-like compound (Htlc) has been characterized using XRD, FT-IR, Raman, and XAS spectroscopy. The intercalation was carried out by anionic exchange of the originally existing chloride ions. The combined use of those techniques gave more insight on the insertion chemistry of Htlcs. Extended X-ray absorption fine structure spectra of the intercalated Htlc demonstrated that the native structure was stable during the iron complex insertion, whereas the exchange process occurred with a partial reduction of hexacyanoferrate(III). Both Raman and FT-IR spectroscopy pointed out the concomitant formation of K(2)NiFe(II)(CN)(6) and KNiFe(III)(CN)(6). The effect of aging on the intercalated product is also addressed.