Click approaches in sol–gel chemistry

The combination of the copper-catalyzed alkyne-azide cycloaddition (CuAAC) reaction with sol–gel processing enables the versatile preparation of sol–gel materials under different shapes with targeted functionalities through a diversity-oriented approach. In this account, the development of the CuAAC reaction under anhydrous conditions for the synthesis of sol–gel precursors and for the assembling of magnetic nanoparticles on self-assembled monolayers is related, as well as the use of the classical CuAAC methodologies for the functionalization of mesoporous silica nanoparticles and microdots arrays. Coupling CuAAC and Sol–Gel will result in simplified preparations of multifunctional materials with controlled morphologies.     

Catalytic Synthesis of 8-Membered Ring Compounds via Cobalt(III)-Carbene Radicals

The metalloradical activation of o-aryl aldehydes with tosylhydrazide and a cobalt(II) porphyrin catalyst produces cobalt(III)-carbene radical intermediates, providing a new and powerful strategy for the synthesis of medium-sized ring structures. Herein we make use of the intrinsic radical-type reactivity of cobalt(III)-carbene radical intermediates in the [Co^II(TPP)]-catalyzed (TPP=tetraphenylporphyrin) synthesis of two types of 8-membered ring compounds; novel dibenzocyclooctenes and unprecedented monobenzocyclooctadienes. The method was successfully applied to afford a variety of 8-membered ring compounds in good yields and with excellent substituent tolerance. Density functional theory (DFT) calculations and experimental results suggest that the reactions proceed via hydrogen atom transfer from the bis-allylic/benzallylic C−H bond to the carbene radical, followed by two divergent processes for ring-closure to the two different types of 8-membered ring products. While the dibenzocyclooctenes are most likely formed by dissociation of o-quinodimethanes (o-QDMs) which undergo a non-catalyzed 8π-cyclization, DFT calculations suggest that ring-closure to the monobenzocyclooctadienes involves a radical-rebound step in the coordination sphere of cobalt. The latter mechanism implies that unprecedented enantioselective ring-closure reactions to chiral monobenzocyclooctadienes should be possible, as was confirmed for reactions mediated by a chiral cobalt-porphyrin catalyst.     

Discrete Hf18 Metal-oxo Cluster as a Heterogeneous Nanozyme for Site-Specific Proteolysis

The selective hydrolysis of proteins by non-enzymatic catalysis is difficult to achieve, yet it is crucial for applications in biotechnology and proteomics. Herein, we report that discrete hafnium metal-oxo cluster [Hf₁₈O₁₀(OH)₂₆(SO₄)₁₃⋅(H₂O)₃₃] ( Hf₁₈ ), which is centred by the same hexamer motif found in many MOFs, acts as a heterogeneous catalyst for the efficient hydrolysis of horse heart myoglobin (HHM) in low buffer concentrations. Among 154 amino acids present in the sequence of HHM, strictly selective cleavage at only 6 solvent accessible aspartate residues was observed. Mechanistic experiments suggest that the hydrolytic activity is likely derived from the actuation of Hf^IV Lewis acidic sites and the Brønsted acidic surface of Hf₁₈ . X-ray scattering and ESI-MS revealed that Hf₁₈ is completely insoluble in these conditions, confirming the HHM hydrolysis is caused by a heterogeneous reaction of the solid Hf₁₈ cluster, and not from smaller, soluble Hf species that could leach into solution.     

Volumetric and Viscosimetric Measurements for Methanol + CH 3 –O–(CH 2 CH 2 O) n –CH 3 ( n = 2, 3, 4) Mixtures at (293.15–303.15) K and Atmospheric Pressure: Application of the ERAS Model

Densities, $$\rho$$, and kinematic viscosities, $$\nu$$, have been determined at atmospheric pressure and at 293.15–303.15 K for binary mixtures formed by methanol and one linear polyether of the type CH3–O–(CH2CH2O)n–CH3 (n = 2, 3, 4). Measurements on $$\rho$$ and $$\nu$$ were carried out, respectively, using an Anton Paar DMA 602 vibrating-tube densimeter and an Ubbelohde viscosimeter. The $$\rho$$ values were used to compute excess molar volumes, $$V_{{\text{m}}}^{{\text{E}}}$$, and, together with the $$\nu$$ results, dynamic viscosities ($$\eta$$). Deviations from linear dependence on mole fraction for viscosity, $$\Delta \eta$$, are also provided. Different semi-empirical equations have been employed to correlate viscosity data. Particularly, the equations used are the: Grunberg–Nissan, Hind, Frenkel, Katti–Chaudhri, McAllister and Heric. Calculations show that better results are obtained from the Hind equation. The $$V_{{\text{m}}}^{{\text{E}}}$$ values are large and negative and contrast with the positive excess molar enthalpies, $$H_{{\text{m}}}^{{\text{E}}}$$, available in the literature, for these systems. This indicates that structural effects are dominant. The $$\Delta \eta$$ results are positive and correlate well with the difference in volumes of the mixture compounds, confirming the importance of structural effects. The temperature dependences of $$\eta$$ and of the molar volume have been used to calculate enthalpies, entropies and Gibbs energies, $$\Delta G^{*}$$, of viscous flow. It is demonstrated that $$\Delta G^{*}$$ is essentially determined by enthalpic effects. Methanol + CH3–O–(CH2CH2O)n–CH3 mixtures have been treated in the framework of the ERAS model. Results for $$H_{{\text{m}}}^{{\text{E}}}$$ are acceptable, while the composition dependence of the $$V_{{\text{m}}}^{{\text{E}}}$$ curves is poorly represented. This has been ascribed to the existence of strong dipolar and structural effects in the present solutions.     

Taba: A Tool to Analyze the Binding Affinity

Evaluation of ligand-binding affinity using the atomic coordinates of a protein-ligand complex is a challenge from the computational point of view. The availability of crystallographic structures of complexes with binding affinity data opens the possibility to create machine-learning models targeted to a specific protein system. Here, we describe a new methodology that combines a mass-spring system approach with supervised machine-learning techniques to predict the binding affinity of protein-ligand complexes. The combination of these techniques allows exploring the scoring function space, generating a model targeted to a protein system of interest. The new model shows superior predictive performance when compared with classical scoring functions implemented in the programs Molegro Virtual Docker, AutoDock4, and AutoDock Vina. We implemented this methodology in a new program named Taba. Taba is implemented in Python and available to download under the GNU license at https://github.com/azevedolab/taba . © 2019 Wiley Periodicals, Inc.     

Chaetopterus variopedatus Bioluminescence: A Review of Light Emission within a Species Complex

Chaetopterus variopedatus has been studied for over a century in terms of its physiology, ecology and life history. One focus of research is on its intrinsic bioluminescent emissions, which can be observed as a blue light emitted from the extremities of individual body segments, or as a secreted mucus. Even though research shows that C. variopedatus is a species complex miscategorized as a single species, all of the variants of this polychaete produce light, which has been investigated in terms of both physiology and biochemistry. Despite decades of study, there are still many questions about the luminescence reaction, and, as of yet, no clear function for light emission exists. This review summarizes the current knowledge on C. variopedatus luminescence in addition to briefly describing its morphology, life cycle and ecology. Possible functions for luminescence were discussed using observations of specimens found in Brazil, along with a comparison of previous studies of other luminescent organisms. Further study will provide a better understanding of how and why C. variopedatus produces luminescence, and purifying the protein and luciferin involved could lead to new bioanalytical applications, as this reaction is unique among all known luminescent systems.     

Theoretical and Experimental Analysis of Protoporphyrin IX Photodegradation Using Multi-Wavelength Light Sources

Photodynamic procedures have been used in many applications, ranging from cancer treatment to microorganism inactivation. Photodynamic reactions start with the activation of a photosensitizing molecule with light, leading to the production of cytotoxic molecules that promote cell death. However, establishing the correct light and photosensitizer dosimetry for a broadband light source remains challenging. In this study, we proposed a theoretical mathematical model for the photodegradation of protoporphyrin IX (PpIX), when irradiated by multi-wavelength light sources. The theoretical model predicts the experimental photobleaching (temporal change in PpIX concentration) of PpIX for different light sources. We showed that photobleaching occurs independently of the light source wavelengths but instead depends only on the number of absorbed photons. The model presented here can be used as an important mathematical approach to better understand current photodynamic therapy protocols and help achieve optimization of the doses delivered.     

A comparative multi-reference configuration interaction study of the low-lying states of two thione isomers of thiophenol

Multi-reference configuration interaction, MR-CI (including extensivity corrections, named +Q), calculations were performed on the S₀–S₃ states of cyclohexa-2,4-diene-1-thione (thione 24 ) and cyclohexa-2,5-diene-1-thione (thione 25 ), which are thione isomers of thiophenol. Several types of uncontracted MR-CIS and MR-CISD wavefunctions were employed, comprising MR-CI expansions as large as ~365 × 10⁶ configuration state functions. The nature of the studied excited states was characterized. Vertical excitation energies (ΔE) and oscillator strengths (f) were computed. The most intense transitions (S₀ → S₂ for 24 and S₀ → S₃ for 25 ) did not change with the wavefunction, although a variation as large as ~1 eV was obtained for the S₃ state of 24 , at the highest (MR-CI+Q) level. On the other hand, ΔE changed at most by ~0.56 eV for 25 as the wavefunction changes, at the same level. The S₁ state of both thiones was found to have nπ* character and is in the visible region. For 24 , S₂ and S₃ are ππ* and nπ* states, respectively, while for 25 the reverse order is obtained. S₂ and S₃ are in the range ~3.5 to 5.2 eV, again at the highest level. It is the first time that the excited states of the title molecules are studied. The computed results agree with the experimental onset of photoreactions of thiones 24 and 25 found by Reva et al (Phys. Chem. Chem. Phys., 2015 , 17, 4888).     

Contribution of CuxO distribution,shape and ratio on TiO2 nanotubes to improve methanol production from CO2 photoelectroreduction

Many studies are focused on the development of materials for converting carbon dioxide into multicarbon oxygenates such as methanol and ethanol, because of their higher energy density and wider applicability. In this work, TiO₂ nanotubes (NT/TiO₂) were modified with Cu_xO nanoparticles in order to investigate the contribution of different ratio of Cu₂O/CuO and its distribution over NT/TiO₂ for CO₂ photoelectro-conversion to methanol. The photoelectrodes were built by anodization process to obtain NT/TiO₂ layer, and the decoration with Cu_xO hybrid system was carried out by electrodeposition process, using Na₂SO₄ or acid lactic as electrolyte, followed by annealing at different temperatures. X-ray photoelectron spectroscopy analysis revealed the predominance of Cu⁺¹ and Cu⁺² at 150 °C and 300 °C, respectively. X-ray diffraction and scanning electron microscopy indicated that under lactic acid solution, the oxide nanoparticles exhibited small size, cubic shape, and uniform distribution on the nanotube wall. While under Na₂SO₄ electrolyte, large nanoparticles with two different morphologies, octahedral and cubic shapes, were deposited on the top of the nanotubes. All modified electrodes converted CO₂ in methanol in different quantities, identified by gas chromatograph. However, the NT/TiO₂ modified with CuO/Cu₂O (80:20) nanoparticles using lactic acid as electrolyte showed better performance in the CO₂ reduction to methanol (0.11 mmol L⁻¹) in relation to the other electrodes. In all cases, a blend among the structures and nanoparticle morphologies were achieved and essential to create new site of reactions what improved the use of light irradiation, minimization of charge recombination rate and promoted high selectivity of products.