Theoretical modeling of the nonenzymatic solvolysis of CMP-NeuAc in an acidic environment

A density-functional-theory investigation of the nonenzymatic solvolysis of the cytydine 5′-monophosphate N-acetylneuraminic acid and its derivatives in the acidic environment is presented. The theoretical calculations of the second stage of the reaction mechanism are in agreement with the hypothesis of a dissociative oxocarbenium-like transition state with proton transfer as a key part of the reaction. The geometries of the transition states of the reactions yielding -methyl and β-methyl glycosides are essentially different. This study provides new theoretical data that can be helpful in elucidating the mechanism of the carbohydrates hydrolysis as well as other reactions catalyzed by the glycosyltransferases.     

Theoretical investigation of the electronic structure of 1-(3,4; 3,5 and 3,6-bis-selenocyanato-phenyl) pyrrolidinofullerenes

The electronic structures and geometries of 1-(3,4; 3,5 and 3,6-bis-Selenocyanato-phenyl) pyrrolidinofullerenes were investigated theoretically using Density Functional theory at the B3LYP/3-21G∗ and B3LYP/6-31G∗ levels of theory. On all levels of theory the ortho isomer is predicted to be the most stable. The obtained optimized geometries, electronic properties and energetics of structural variables are discussed.     

Mechanical and electrical properties of nanostructured ‘plastic metals’

Deformable, supraspherical (SS) aggregates of metal nanoparticles (NPs) connected by long-chain dithiol ligands self-assemble into nanostructured materials of macroscopic dimensions. These materials are both malleable/moldable at room temperature as well as electrically conductive. Upon gentle heating, they harden into polycrystalline metals. The paper discusses qualitative models that rationalize the mechanical and electrical properties of these unusual ‘plastic metals’.     

Cu(II)-imprinted styrene-divinylbenzene beads as a new sorbent for flow injection-flame atomic absorption determination of copper

The paper reports preparation and analytical features of a new Cu(II)-imprinted polymer, based on salen-OMe ligand 2,2′-[ethane-1,2-diylbis(nitrilo(E)methylylidene)]bis(6-allyl-4-methoxyphenol) and styrene-divinylbenzene matrix, as well as its application to on-line preconcentration and flame atomic absorption determination of copper. Sorbent beads (average diameter of 60-80 µm) were obtained using suspension polymerization technique and employed as a column filling. Copper sorption was the most effective at pH 6.8, whereas the highest elution effectiveness was observed when 0.5% HNO₃ was applied. The sorbent exhibited good long-term stability and acid resistance. Enrichment factor (EF) of 12 was found for 60 s loading time and loading flow rate of 4 mL min^− 1. EF value may be further increased by expanding the loading time and/or flow rate. Batch sorbent capacity in optimal pH conditions was found to be 0.16 mmol g^− 1 (9.55 mg g^− 1) of a dry polymer. Calcium(II) turned out to be the only significant interferent. Cadmium(II), silver(I), nickel(II), zinc(II) in concentrations lower than about 1 mg L^− 1 did not disturb copper(II) preconcentration. Different calibration methods such as: set of standards method (SSM), standard addition method (SAM) and combinatory calibration method (CCM) were employed for copper(II) determination in tap water, spring mineral water and certified reference material. Analysis of EU-H-3 reference material confirmed good accuracy of the proposed method. Relative standard deviation (RSD) was 3.2 for standard addition method and 2.8% for set of standard calibration method. Detection limit for sample consumption 16 mL was 1.03 and 1.07 µgL^-1 respectively.     

Application of 1′,2,3,3′,4,4′-Hexa-O-benzylsucrose in the Preparation of Sucrose Macrocycles via a Click Chemistry Route: Regioselectivity Study

Abstract

1′,2,3,3′,4,4′-Hexa-O-benzyl-sucrose was applied in the preparation of sucrose-based macrocycles via a click chemistry route. This was realized by protection of the 6′?OH with silyl block followed by elongation of the glucose end with the ?CH₂CH₂N₃ unit. Removal of the silyl block and subsequent propargylation of the released C6′?OH afforded the corresponding synthon, cyclization of which under the click condition provided the desired macrocycle with the expected 1,4-pattern of substituents at the triazole ring.     

Mechanically Driven Activation of Polyaniline into Its Conductive Form

Mechanical treatment of polymers produces surface cations and anions which, as demonstrated here for the first time, can drive chemical reactions. In particular, it is shown that such a mechanical treatment transforms nonconductive polyaniline into its conductive form. These results provide a mechanical means of patterning conductive polymers and also coating small polymer objects with conductive polyaniline films preventing accumulation of static electricity.     

Hypochlorous acid-induced oxidative damage of human red blood cells: effects of tert-butyl hydroperoxide and nitrite on the HOCl reaction with erythrocytes

Hypochlorous acid, one of the most powerful biological oxidants, is believed to be important in the pathogenesis of some diseases. The purpose of this study was to further characterise the membrane and intracellular events which resulted in HOCl-induced oxidative impairments and haemolysis of human erythrocytes and interaction of different oxidative agents, which accumulated during respiratory burst, in the process of RBS oxidation. The sequence of cellular events after red blood cell exposure to HOCl: cell morphological transformations, oxidation of cellular constituents, enzyme modifications, and haemolysis have been evaluated. It was shown that HOCl-treated cells underwent colloid-osmotic haemolysis, preceded by rapid morphological transformations and membrane structural transitions. The activation energy of the process of haemolysis (after removal of the excess of oxidative agent) was estimated to be 146+/-22 kJ/mol at temperatures above the break point of Arrhenius plot (31-32 degrees C). This value corresponds to the activation energy of the process of protein denaturation. Modification of erythrocytes by HOCl inhibited membrane acetylcholinesterase (uncompetitive type of inhibition), depleted intracellular glutathione, activated intracellular glutathione peroxidase, but did not induce membrane lipid peroxidation. The presence of other oxidants, nitrite or tert-butyl hydroperoxide (t-BHP), promoted the oxidative damage induced by HOCl and led to new oxidative reactions.     

How and why nanoparticle's curvature regulates the apparent pKa of the coating ligands

Dissociation of ionizable ligands immobilized on nanopaticles (NPs) depends on and can be regulated by the curvature of these particles as well as the size and the concentration of counterions. The apparent acid dissociation constant (pK(a)) of the NP-immobilized ligands lies between that of free ligands and ligands self-assembled on a flat surface. This phenomenon is explicitly rationalized by a theoretical model that accounts fully for the molecular details (size, shape, conformation, and charge distribution) of both the NPs and the counterions.     

Investigation of selected parameters of capillary zone electrophoresis method for analysis of isolates of outer membrane vesicles

The capillary zone electrophoresis (CZE) has recently been proposed by our group as a novel technique for outer membrane vesicles (OMVs) characterization (J. Chromatography 1621 (2020) 461047). In present work the impact of selected parameters of CZE method on OMVs isolates analysis was assessed. It was shown that the extension of sample injection plug length significantly improves the detectability of macromolecular aggregates in CZE. Moreover, a negligible adsorption of OMVs to both uncoated and polymer-modified (poly(DMA-GMA-MAPS)) capillary walls was proven. Finally, the relaxation effect as well as deformation/polarization of vesicles were demonstrated to affect OMVs electrophoretic mobility. The significance of these findings was discussed.