Kinetics of proton transfer in a green fluorescent protein: A laser-induced pH jump study

The sub-millisecond protonation dynamics of the chromophore in S65T mutant form of the green fluorescent protein (GFP) was tracked after a rapid pH jump following laser-induced proton release from the caged photolabile compoundo-nitrobenzaldehyde. Following a jump in pH from 8 to 5 (which is achieved within 2 μs), the fluorescence of S65T GFP decreased as a single exponential with a time constant of ∼90 μs. This decay is interpreted as the conversion of the deprotonated fluorescent GFP chromophore to a protonated non-fluorescent species. The protonation kinetics showed dependence on the bulk viscosity of the solvent, and therefore implicates bulk solvent-controlled protein dynamics in the protonation process. The protonation is proposed to be a sequential process involving two steps: (a) proton transfer from solvent to the chromophore, and (b) internal structural rearrangements to stabilize a protonated chromophore. The possible implications of these observations to protein dynamics in general is discussed     

Global Solution of Optimization Problems with Parameter-Embedded Linear Dynamic Systems

This paper develops a theory for the global solution of nonconvex optimization problems with parameter-embedded linear dynamic systems. A quite general problem formulation is introduced and a solution is shown to exists. A convexity theory for integrals is then developed to construct convex relaxations for utilization in a branch-and-bound framework to calculate a global minimum. Interval analysis is employed to generate bounds on the state variables implied by the bounds on the embedded parameters. These bounds, along with basic integration theory, are used to prove convergence of the branch-and-bound algorithm to the global minimum of the optimization problem. The implementation of the algorithm is then considered and several numerical case studies are examined thoroughly     

Computation of the Morse Spectrum

The Morse spectrum is a limit set of Lyapunov exponents of periodic pseudo-trajectories. This notion is especially important in the case where a dynamical system has infinitely many periodic trajectories of large period. A method for estimating the Morse spectrum was suggested by the first author in J. Math. Anal. Appl., 252 (2000). This method is based on ideas of symbolic dynamics which reduces the study of a dynamical system to the study of a certain graph, called a symbolic image. Within the framework of this method, the computation of the Morse spectrum is connected with searching simple closed paths and extracting contours with suitable characteristics. However, under iterations of the symbolic image, the number of such paths sharply increases, which leads to huge expenses of memory and time. We suggest an algorithm for constructing contours with the maximal and minimal mean values. This algorithm is based on a special version of the simplex method. Numerical tests are also described. Bibliography: 13 titles. Illustrations: 3 figures.     

Existence of solutions to projected differential equations in Hilbert spaces

We prove existence and uniqueness of integral curves to the (discontinuous) vector field that results when a Lipschitz continuous vector field on a Hilbert space of any dimension is projected on a non-empty, closed and convex subset.

     

Discrete mathematics in primary and secondary schools in the United States

This article provides a status report on discrete mathematics in America's schools, including an overview of publications and programs that have had major impact. It discusses why discrete mathematics should be introduced in the schools and the authors' efforts to advocate, facilitate, and support the adoption of discrete mathematics topics in the schools. Their perspective is that discrete mathematics should be viewed not only as a collection of new and interesting mathematical topics, but, more importantly, as a vehicle for providing teachers with a new way to think about traditional mathematical topics and new strategies for engaging their students in the study of mathematics.     

Stark's conjecture over complex cubic number fields

Systematic computation of Stark units over nontotally real base fields is carried out for the first time. Since the information provided by Stark's conjecture is significantly less in this situation than the information provided over totally real base fields, new techniques are required. Precomputing Stark units in relative quadratic extensions (where the conjecture is already known to hold) and coupling this information with the Fincke-Pohst algorithm applied to certain quadratic forms leads to a significant reduction in search time for finding Stark units in larger extensions (where the conjecture is still unproven). Stark's conjecture is verified in each case for these Stark units in larger extensions and explicit generating polynomials for abelian extensions over complex cubic base fields, including Hilbert class fields, are obtained from the minimal polynomials of these new Stark units.

     

Laser spectroscopic investigation of a new precursor-type polyparaphenylenevinylene

Optical, structural and morphological properties of thin films of polyparaphenylenevinylene (PPV) formed by an alkyl sulfinyl precursor route have been studied. Thin films were fabricated on an optical glass and on quartz glass either by spin-coating of the precursor solution or by layer-by-layer deposition using Langmuir–Blodgett technique. PPV precursor films were also spin-coated on gold-coated glass in order to study thin-film optical parameters by surface plasmon spectroscopy. We have been successful in forming about 40 precursor mono layers on quartz glass by Langmuir–Blodgett technique using optimized surface pressure and dipping conditions. After thermal conversion of the precursor layers good quality fluorescent PPV films of yellow colour have been obtained. Optical characterization of the films was carried out by linear absorption and emission spectroscopy, ellipsometry, and surface plasmon spectroscopy. Structural and morphological studies on the thin films were carried out by using X-ray scattering and atomic force microscopy. Wave-guided travelling-wave laser action has been achieved in a PPV film on quartz glass. The sample was transversally pumped with picosecond laser pulses (wavelength 347.15 nm, duration 35 ps). Laser emission occurred at 550 nm for pump pulse energy densities above .     

On the origin of irreproducible behaviour of Na1−xLixNbO3 solid solutions

The irreproducibility of electrical properties of Na_0.88Li_0.12NbO₃ solid solution on thermal cycling reported by M.A.L. Nobre and S. Lanfredi is explained by gradual decomposition of the supersaturated solid solution below ca. 800 °C.     

The effect of construction material, contents and room geometry on the sound field in dwellings at low frequencies

An experimentally validated finite element method is used to model the sound level in rooms at low frequencies. It is demonstrated that the dimensions of rectangular rooms strongly influence the sound pressure level difference. Additional factors were investigated which are not normally considered in the frequency range where diffuse sound field conditions can be assumed. Three effects were investigated: room damping due to wall vibrations, furniture, the effect of small deviations from simple rectangular shapes. It is confirmed by field measurements that the vibrations of masonry walls and floors introduce less damping than surfaces of lightweight construction. Assigning to the FE model a damping equivalent to a surface absorption of 0.02 reproduces the effect of walls of heavyweight construction. Damping equivalent to a surface absorption of 0.15 reproduces the effects of plastered timber-frame walls, floors and ceilings. The work was briefly extended to a room pair built with heavyweight and lightweight material of construction. The modification of the shape of the room frequency response highlights well the effect of material of construction. In-situ and laboratory measurements show that furniture has little effect on steady-state room response below 100 Hz. Modelling a wall recess smaller than 0.5 m improved the agreement between prediction and measurements but the assumption of a simple rectangular room remains appropriate.