Application of a new nanoporous sorbent for extraction and pre-concentration of lead and copper ions

The authors describe a method for the trace determination of copper (II) and lead (II) in water and fish samples using solid-phase extraction via siliceous mesocellular foam functionalised by dithizone. Siliceous mesocellular was functionalised with dithizone, and the resulting sorbent was characterised by scanning electron microscopy, surface area analysis, thermogravimetric/differential thermal analysis and FTIR. Following solid-phase extraction of target ions by the sorbent, copper and lead ions were quantified by flame atomic absorption spectrometry. Factors affecting the sorption and desorption of target ions by the sorbent were evaluated and optimised. The calibration plot is linear in the 1 – 500 μg L^?1 copper (II) and 3–700 μg L^?1 lead (II) concentration range. The relative recovery efficiency in real sample analysis is in the range from 96 to 102%, and precision varies between 1.7 and 2.8%. It is should be noted that the limits of detection for the copper and lead analysis were 0.8 and 1.6 μg L^?1, respectively. Also, the adsorption capacities for copper and lead ions were 120 and 160 mg g^?1, respectively. The obtained pre-concentration factor for the lead and copper ions by the proposed solid-phase extraction was 75. The method was successfully applied to the determination of low levels of copper (II) and lead (II) in tap, Caspian sea, Persian gulf and lake water and also their detection in fish samples.     

Speciation and determination of chromium ions by dispersive micro solid phase extraction using magnetic graphene oxide followed by flame atomic absorption spectrometry

A selective, simple and fast dispersive micro solid phase extraction method using magnetic graphene oxide (GO) as an efficient sorbent has been developed for the extraction, separation and speciation analysis of chromium ions. The method is based on different adsorption behaviour of Cr(VI) and Cr(III) species onto magnetic GO in aqueous solutions which allowed the selective separation and extraction of Cr(VI) in the pH range of 2.0–3.0. The retained Cr(VI) ions by the sorbent were eluted using 0.5 mL of 0.5 mol L^?1 nitric acid solution in methanol and determined by ?ame atomic absorption spectrometry. Total chromium content was determined after the oxidation of Cr(III) to Cr(VI) by potassium permanganate. All effective parameters on the performance of the extraction process were thoroughly investigated and optimised. Under the optimised conditions, the method exhibited a linear dynamic range of 0.5–50.0 µg L^?1 with a detection limit of 0.1 µg L^?1 and pre-concentration factor of 200. The relative standard deviations of 3.8% and 4.6% (n = 8) were obtained at 25.0 µg L^?1 level of Cr(VI) for intra- and inter-day analysis, respectively. The method was successfully applied to the speciation and determination of Cr(VI) and Cr(III) in environmental water samples.     

Pharmacophore generation,atom-based 3D-QSAR and molecular dynamics simulation analyses of pyridine-3-carboxamide-6-yl-urea analogues as potential gyrase B inhibitors

DNA gyrase subunit B (GyrB) is an attractive drug target for the development of antibacterial agents with therapeutic potential. In the present study, computational studies based on pharmacophore modelling, atom-based QSAR, molecular docking, free binding energy calculation and dynamics simulation were performed on a series of pyridine-3-carboxamide-6-yl-urea derivatives. A pharmacophore model using 49 molecules revealed structural and chemical features necessary for these molecules to inhibit GyrB. The best fitted model AADDR.13 was generated with a coefficient of determination (r²) of 0.918. This model was validated using test set molecules and had a good r² of 0.78. 3D contour maps generated by the 3D atom-based QSAR revealed the key structural features responsible for the GyrB inhibitory activity. Extra precision molecular docking showed hydrogen bond interactions with key amino acid residues of ATP-binding pocket, important for inhibitor binding. Further, binding free energy was calculated by the MM-GBSA rescoring approach to validate the binding affinity. A 10 ns MD simulation of inhibitor #47 showed the stability of the predicted binding conformations. We identified 10 virtual hits by in silico high-throughput screening. A few new molecules were also designed as potent GyrB inhibitors. The information obtained from these methodologies may be helpful to design novel inhibitors of GyrB.     

Development of an integrated informatics toolbox: HT kinetic and virtual screening

We discuss thoroughly aspects and issues for the development of a bespoke, but generic, electronic infrastructure designed to cope with the dynamic in high-throughput experimentation and knowledge management, is applicable to large or contract research organizations. We present the first generation of an informatics platform developed for TOPCOMBI, a research project funded by the European Commission for Nanotechnology and Nanoscience. It is composed by an infrastructure and a collection of modules dealing with laboratory analytics, robotics, data handling and analytics, optimization, in-database processing and visualization, which are developed collegially by the partners of the Consortium. This best-of-breed informatics system enables the capture and the re-usage of processes and methodologies, i.e. process and data flows, using the workflow paradigm. Complex workflows designed by power users can be eventually used by either other domain experts or by novices through a web portal. Workflows can also be run interactively to allow visual analytics for instance, or automatically. We present two case studies dealing with the kinetic study of glycerol catalytic oxidation using parallel equipments, and a novel, fully integrated QSAR applied in heterogeneous catalysis, respectively.     

The stability of a shearing viscous star with an electromagnetic field

We analyze the role of the electromagnetic field for the stability of a shearing viscous star with spherical symmetry. Matching conditions are given for the interior and the exterior metrics. We use a perturbation scheme to construct the collapse equation. The range of instability is explored in Newtonian and post Newtonian (pN) limits. We conclude that the electromagnetic field diminishes the effects of the shearing viscosity in the instability range and makes the system more unstable in both Newtonian and post Newtonian approximations.     

Experimental signatures of cosmological neutrino condensation

Superfluid condensation of neutrinos of cosmological origin at a low enough temperature can provide simple and elegant solution to the problems of neutrino oscillations and the accelerated expansion of the universe. It would give rise to a late time cosmological constant of small magnitude and also generate tiny masses for the neutrinos as observed from their flavor oscillations. We show that carefully prepared beta decay experiments in the laboratory would carry signatures of such a condensation, and thus, it would be possible to either establish or rule out neutrino condensation of cosmological scale in laboratory experiments.     

Synthesis, spectroscopic and electrochemical studies of N,N-bis[(E)-2-thienylmethylidene]-1,8-naphthalenediamine and its Cu(II) complex: DNA cleavage and generation of superoxide anion

A novel tetradentate Cu(II) complex of the type, [CuL](NO(3))(2) was synthesized by the interaction of Schiff base ligand, N,N-bis[(E)-2-thienylmethylidene]-1,8-naphthalenediamine, L obtained by the condensation of thiophene-2-carboxaldehyde and 1,8-diaminonaphthalene. The formation of Schiff base ligand, L and its Cu(II) complex was confirmed on the basis of results of elemental analyses, mass, FT-IR, (1)H and (13)C{(1)H} NMR spectral studies. UV-Vis, EPR and magnetic susceptibility data support a square planar environment around Cu(II) ion. However, molar conductance values confirmed 1:2 electrolytic nature for the Cu(II) complex. The electrochemical studies of Cu(II) complex was carried out by using cyclic voltammetry which revealed the complex to exhibit quasi reversible process. The biological activity of Cu(II) complex such as ability to bind DNA and DNA cleavage were studied where the Cu(II) complex was shown to cause considerable DNA cleavage and also generated reactive oxygen species such as superoxide anion. Since it is known that various anticancer drugs act through induction of oxidative stress that is mediated by reactive oxygen species, our results suggest a putative role of Cu(II) complex similar to various anticancer drugs.     

Orthogonally reactive SAMs as a general platform for bifunctional silica surfaces

We report the synthesis and self-assembly of azide and amine trimethoxysilanes that result in mixed monolayers on silica. The amine and azide functional groups can be independently reacted with acid chlorides and terminal alkynes, respectively. Consequently, these orthogonally reactive monolayers represent a general starting point for making bifunctional surfaces. Using X-ray photoelectron spectroscopy, we determined the azide/amine surface ratio as well as the reactivity of the azide and amine functional groups in the mixed self-assembled monolayer (SAM). Significantly, the surface azide/amine ratio was much lower than the azide/amine ratio in the self-assembly mixture. After determining the self-assembly mixture composition that would afford 1:1 azide-amine mixed monolayers, we demonstrated their subsequent functionalization. The resulting bifunctional surface has a similar functional group ratio to the azide/amine precursor SAM demonstrating the generality of this approach.     

Emulsification potential of a newly isolated biosurfactant-producing bacterium, Rhodococcus sp. strain TA6

An indigenous biosurfactant producing bacterium, Rhodococcus sp. strain TA6 was isolated from Iranian oil contaminated soil using an efficient enrichment and screening method. During growth on sucrose and several hydrocarbon substrates as sole carbon source, the bacterium could produce biosurfactants. As a result of biosurfactant synthesis, the surface tension of the growth medium was reduced from 68mNm(-1) to values below 30mNm(-1). The biosurfactant was capable of forming stable emulsions with various hydrocarbons ranging from pentane to light motor oil. Preliminary chemical characterization revealed that the TA6 biosurfactant consisted of extracellular lipids and glycolipids. The biosurfactant was stable during exposure to high salinity (10% NaCl), elevated temperatures (120°C for 15min) and within a wide pH range (4.0-10.0). The culture broth was effective in recovering up to 70% of the residual oil from oil-saturated sand packs which indicates the potential value of the biosurfactant in enhanced oil recovery.