Biohydrolysis of urea from urea-bearing wastewater

Biological stabilization of urea is a two staged process; (i) urea hydrolysis and (ii) ammonia stripping/nitrification-denitrification. Ammonia thus produced is either stripped off by usual methods or after converting into nitrate using chemoautotrophic bacteria. On denitrification, nitrate is finally converted into nitrogen gas by means of heterotrophic bacteria. Details of stabilization of urea from urea bearing wastewater using urea biohydrolyser are presented in this paper.     

On 3-D graphical representation of DNA primary sequences and their numerical characterization

In this article we (1) outline the construction of a 3-D "graphical" representation of DNA primary sequences, illustrated on a portion of the human beta globin gene; (2) describe a particular scheme that transforms the above 3-D spatial representation of DNA into a numerical matrix representation; (3) illustrate construction of matrix invariants for DNA sequences; and (4) suggest a data reduction based on statistical analysis of matrix invariants generated for DNA. Each of the four contributions represents a novel development that we hope will facilitate comparative studies of DNA and open new directions for representation and characterization of DNA primary sequences.     

Preparation of 2-aryl and 2-aryloxymethyl imidazo[1,2-a]pyridines and related compounds

A series of substituted 2-aryl imidazo[1,2-a]pyridines has been prepared in which a variety of substituents are introduced on the 4′-position of the phenyl ring and on the 3, 5 , 6 or 7 position of the heterocyclic ring. Most examples have acetamido, bromo, cyano, or formyl substituents at the 4′-position. Analogous imidazo-[2,1-b]fhiazoles and imidazo[1,2-a]pyrimidines have also been prepared. Another series of compounds consisting of 4′-formylphenoxymethyl derivatives of imidazole, the three positional isomers of pyridine, thiazole, benzimidazole and ring-substituted imidazo[1,2-a]pyridines has been prepared. 2-(4′-Formylphenylethenyl) derivatives of imidazole and imidazo[1,2-a]pyridine were also prepared.     

Asymmetric dearomatization of the furan ring promoted by conjugate organolithium addition to (menthyloxy)(3-furyl)carbene complexes of chromium

The sequential low-temperature addition reaction of an organolithium compound and methyl triflate to (menthyloxy)(3-furyl)carbene complexes of chromium and tungsten proceeded with excellent regioselectivity (1,4-addition) and diastereoselectivity (2,3-trans disposition of the nucleophile and electrophile groups) to afford new 2,3-disubstituted (2,3-dihydro-3-furyl)carbene complexes. In addition, a high degree of diastereofacial selectivity was achieved by employing alkenyllithium compounds. After detachment of both the metal fragment and the chiral auxiliary group, trisubstituted 2,3-dihydrofuran derivatives containing a quaternary stereogenic center at the C3 position were obtained. The characterization, including X-ray crystallography, of a novel type of stable four-membered chelate (eta(2)-alkene)tetracarbonylcarbene complex of chromium is also reported.     

Reactive oxygen and nitrogen species (RONS) scavenging reactions of o-vanillin: Pulse radiolysis and stopped flow studies

Reactions of peroxyl radicals and peroxynitrite with o-vanillin (2-hydroxy 3-methoxy benzaldehyde), a positional isomer of the well-known dietary compound vanillin, were studied to understand the mechanisms of its free radical scavenging action. Trichloromethylperoxyl radicals (CCl₃O ₂ ^· ) were used as model peroxyl radicals and their reactions with o-vanillin were studied using nanosecond pulse radiolysis technique with absorption detection. The reaction produced a transient with a bimolecular rate constant of approx. 10⁵ M⁻¹s⁻¹, having absorption in the 400–500 nm region with a maximum at 450 nm. This spectrum looked significantly different from that of phenoxyl radicals of o-vanillin produced by the one-electron oxidation by azide radicals. The spectra and decay kinetics suggest that peroxyl radical reacts with o-vanillin mainly by forming a radical adduct. Peroxynitrite reactions with o-vanillin at pH 6.8 were studied using a stopped-flow spectrophotometer. o-Vanillin reacts with peroxynitrite with a bimolecular rate constant of 3 × 10³ M⁻¹s⁻¹. The reaction produced an intermediate having absorption in the wavelength region of 300–500 nm with a absorption maximum at 420 nm, that subsequently decayed in 20 s with a first-order decay constant of 0.09 s⁻¹. The studies indicate that o-vanillin is a very efficient scavenger of peroxynitrite, but not a very good scavenger of peroxyl radical. The reactions take place through the aldehyde and the phenolic OH group and are significantly different from other phenolic compounds.     

Fibrous Silica Composites Fabricated Via Sol–Gel Processing Using Amino Acid Surfactant Templating

Fibrils covered by a silica shell have been fabricated by using fibrous aggregates of amino acid surfactant, N-dodecanoyl--alanine, as a template for silicate generated in situ by sol–gel processing in an aqueous solution at pH around 6 and ambient temperature. It was shown that these conditions were inappropriate for tetraethoxysilane to generate silica. The synthesis was performed only when a new water-soluble precursor, tetrakis (2-hydroxy ethyl) orthosilicate, was applied. It is suggested that silica nucleation on the surfactant fibrils takes place via the formation of hydrogen bonds with corresponding functional groups of the amino acid residues.     

Numerical observation of preferred directionality in ion ejection from stretched rectilinear ion traps

We report on numerical investigations of directionality of ion ejection in stretched rectilinear ion traps (RIT). Three 4-electrode trap geometries have been investigated. In all cases, one pair of electrodes has slits at their center and the other pair has no slits. The studied traps include the RIT-S, in which the mass analyzer electrodes are symmetrically positioned around the central axis; the RIT-X, in which the mass analyzer has a stretch in the direction of the electrodes which have slits (labeled as x-direction); and the RIT-Y, in which the mass analyzer has a stretch in the direction of the electrodes which have no slits (labeled as y-direction).Our analysis has been carried out on two-dimensional (2D) fields at the centre of an infinitely long mass analyzer. The boundary element method (BEM) has been used for field computations. The trajectory of ion motion has been generated using Runge Kutta fourth order integration.Three sets of simulations have been carried out on each of the RIT-S, the RIT-X and the RIT-Y to check for directionality of ion ejection. In the first, we numerically obtain the stability region on the potential (U_dc– V_rf) axes. In the second we generate an escape velocity plot with U_dc=0 for different values of V_rf. In the third, we simulate the mass selective boundary ejection experiment on a single ion.In the symmetric RIT-S, as expected, all three simulations show that there is an equal probability of ion reaching the trap boundary in either of the x- or y-directions. For the stretched traps, however, the results are dramatically different. For the RIT-X, all three simulations suggest that ion destabilization at the stability boundary occurs in the x-direction. Similarly, for the RIT-Y, ions preferentially get destabilized in the y-direction. That is, ions reaching the trap boundary overwhelmingly prefer the stretch direction.     

Nanovesicles based on self-assembly of conformationally constrained aromatic residue containing amphiphilic dipeptides

Peptide-based vesicular structures have been the focus of research in the past decade for their potential application as drug delivery agents. We here report the self-assembly of amphiphilic dipeptides containing conformation-constraining alpha,beta-dehydrophenylalanine into nanovesicles. The vesicles can encapsulate small drug molecules such as riboflavin and vitamin B(12), bioactive peptides, and small protein molecules. The nanovesicles are resistant to treatment of a nonspecific protease, proteinase K, and are stable at low concentrations of monovalent and divalent cations. The vesicles are effectively taken up by actively growing cells in culture and show no observable cytopathic effects. These peptide-based nanostructures can be considered as models for further development as delivery agents for different biomolecules.     

Attachment of different donor groups to a cryptand for modulation of two-photon absorption cross-section

Two-photon absorption (TPA) properties of a laterally nonsymmetric aza cryptand with attached side arms have been investigated. This series of Schiff base derivatives supports the mechanistic approach for enhancing the TPA process, which is usually dictated by molecular geometry, pi-bridging, delocalization length, and corresponding charge-transfer possibilities. The results described here suggest that on increasing the branching units, the TPA cross-section, sigma((2)), can be tuned to a larger value. The TPA activity is "switched on" when a metal atom enters the cavity and serves as a conduit of electronic delocalization. The sigma((2)) value increases as the donor strength increases. The maximum value is obtained on moving from the single-branched system to the nearly threefold symmetry. This serves as a useful synthetic strategy for designing novel octupolar molecules with high sigma((2)) values. Theoretical calculations at the B3LYP functional with the 6-31G* basis set under DFT formalism provide supporting evidence that the communication between the side arms through the metal d orbital and more ordered geometry of chromophores leads to a smaller HOMO-LUMO gap, which has a great influence upon the electronic properties of the molecules.