Oxidative decarbonylation of m-terphenyl isocyanide complexes of molybdenum and tungsten: precursors to low-coordinate isocyanide complexes

Synthetic studies are presented addressing the oxidative decarbonylation of molybdenum and tungsten complexes supported by the encumbering m-terphenyl isocyanide ligand CNAr(Dipp2) (Ar(Dipp2) = 2,6-(2,6-(i-Pr)(2)C(6)H(3))(2)C(6)H(3)). These studies represent an effort to access halide or pseudohalide M/CNAr(Dipp2) species (M = Mo, W) for use as precursors to low-coordinate, low-valent group 6 isocyanide complexes. The synthesis and structural chemistry of the tetra- and tricarbonyl tungsten complexes trans-W(CO)(4)(CNAr(Dipp2))(2) and trans-W(NCMe)(CO)(3)(CNAr(Dipp2))(2) are reported. The acetonitrile adducts trans-M(NCMe)(CO)(3)(CNAr(Dipp2))(2) (M = Mo, W) react with I(2) to form divalent, diiodide complexes in which the extent of decarbonylation differs between Mo and W. In the molybdenum example, the diiodide, dicarbonyl complex MoI(2)(CO)(2)(CNAr(Dipp2))(2) is generated, which has an S = 1 ground state in solution. Paramagnetic group 6 MX(2)L(4) complexes are rare, and the structure of MoI(2)(CO)(2)(CNAr(Dipp2))(2) is discussed in relation to other diamagnetic and C(2v)-distorted MX(2)L(4) complexes. Diiodide MoI(2)(CO)(2)(CNAr(Dipp2))(2) reacts further with I(2) to effect complete decarbonylation, producing the paramagnetic tetraiodide complex trans-MoI(4)(CNAr(Dipp2))(2). The reactivity of the trans-M(NCMe)(CO)(3)(CNAr(Dipp2))(2) (M = Mo, W) complexes toward benzoyl peroxide is also surveyed, and it is shown that dicarboxylate complexes can be obtained by oxidative or salt-elimination routes. The reduction behavior of the tetraiodide complex trans-MoI(4)(CNAr(Dipp2))(2) toward Mg metal and sodium amalgam is studied. In benzene solution under N(2), trans-MoI(4)(CNAr(Dipp2))(2) is reduced by Na/Hg to the η(6)-arene-dinitrogen complex, (η(6)-C(6)H(6))Mo(N(2))(CNAr(Dipp2))(2). The diiodide-η(6)-benzene complex (η(6)-C(6)H(6))MoI(2)(CNAr(Dipp2))(2) is an isolable intermediate in this reduction reaction, and its formation and structure are discussed in context of putative low-coordinate, low-valent molybdenum isocyanide complexes.     

Models of the low-spin iron(III) hydroperoxide intermediate of heme oxygenase: magnetic resonance evidence for thermodynamic stabilization of the d(xy) electronic state at ambient temperatures

The (13)C pulsed ENDOR and NMR study of [meso-(13)C-TPPFe(OCH(3))(OO(t)Bu)](-) performed in this work shows that although the unpaired electron in low-spin ferrihemes containing a ROO(-) ligand resides in a d(pi) orbital at 8 K, the d(xy) electron configuration is favored at physiological temperatures. The variable temperature NMR spectra indicate a dynamic situation in which a heme with a d(pi) electron configuration and planar porphyrinate ring is in equilibrium with a d(xy) electron configuration that has a ruffled porphyrin ring. Because of the similarity in the EPR spectra of the hydroperoxide complexes of heme oxygenase, cytochrome P450, and the model heme complex reported herein, it is possible that these two electron configurations and ring conformations may also exist in equilibrium in the enzymatic systems. The ruffled porphyrinate ring would aid the attack of the terminal oxygen of the hydroperoxide intermediate of heme oxygenase (HO) on the meso-carbon, and the large spin density at the meso-carbons of a d(xy) electron configuration heme suggests the possibility of a radical mechanism for HO. The dynamic equilibrium between the ruffled (d(xy)) and planar (d(pi)) conformers observed in the model complexes also suggests that a flexible heme binding cavity may be an important structural motif for heme oxygenase activity.     

Crystalline Cyclic (Alkyl)(amino)carbene‐tetrafluoropyridyl Radical

A stable cyclic (alkyl)(amino)carbene (CAAC) 1 inserts into the para‐CF bond of pentafluoropyridine, and after fluoride abstraction, the iminium‐pyridyl adduct [ 3 ]⁺ was isolated. A cyclic voltammetry study shows a reversible three‐state redox system involving [ 3 ]⁺, [ 3 ] ^? , and [ 3 ] ^? . The CAAC‐pyridyl radical [ 3 ] ^? , obtained by reduction of [ 3 ]⁺ with magnesium, has been spectroscopically and crystallographically characterized. In contrast to the lack of π communication between the CAAC and the pyridine units in cation [ 3 ]⁺, the unpaired electron of [ 3 ] ^? is delocalized over an extended π system involving both heterocycles.     

Derivation of class II force fields. VIII. Derivation of a general quantum mechanical force field for organic compounds

A class II valence force field covering a broad range of organic molecules has been derived employing ab initio quantum mechanical "observables." The procedure includes selecting representative molecules and molecular structures, and systematically sampling their energy surfaces as described by energies and energy first and second derivatives with respect to molecular deformations. In this article the procedure for fitting the force field parameters to these energies and energy derivatives is briefly reviewed. The application of the methodology to the derivation of a class II quantum mechanical force field (QMFF) for 32 organic functional groups is then described. A training set of 400 molecules spanning the 32 functional groups was used to parameterize the force field. The molecular families comprising the functional groups and, within each family, the torsional angles used to sample different conformers, are described. The number of stationary points (equilibria and transition states) for these molecules is given for each functional group. This set contains 1324 stationary structures, with 718 minimum energy structures and 606 transition states. The quality of the fit to the quantum data is gauged based on the deviations between the ab initio and force field energies and energy derivatives. The accuracy with which the QMFF reproduces the ab initio molecular bond lengths, bond angles, torsional angles, vibrational frequencies, and conformational energies is then given for each functional group. Consistently good accuracy is found for these computed properties for the various types of molecules. This demonstrates that the methodology is broadly applicable for the derivation of force field parameters across widely differing types of molecular structures. Copyright 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1782-1800, 2001     

Deprotection of Thioacetals Using K2S2O8/[bmim]Br as a Mild and Efficient Reagent under Solvent-Free Conditions

Summary. A straightforward and effective procedure for the deprotection of thioacetals to the corresponding carbonyl compounds using potassium persulfate and the ionic liquid [bmim]Br under solvent-free conditions is reported. A variety of aliphatic and aromatic 1,3-dithiolanes or 1,3-dithanes was deprotected to the corresponding carbonyl derivatives by this procedure.     

Synthesis and formulation of self-immolative PEG-aryl azide block copolymers and click-to-release reactivity with trans-cyclooctene

Self-immolative aryl azides can react with trans-cyclooctenes (TCO), triphenylphosphines or hydrogen sulfide (H₂S) to activate prodrugs, imaging probes and drug delivery systems. To date, the synthesis of polymers containing these aryl azide self-immolative linkers and their reactivity with a strained alkene (i.e., in a bioorthogonal reaction) has not been explored. Also, due to the instability of aryl azides towards light and high temperatures, the polymerization methods compatible with aryl azides are limited. Through systematic investigation of the reversible addition-fragmentation chain transfer (RAFT) and atom transfer radical polymerization (ATRP) methods, a self-immolative PEG-aryl azide block copolymer (PEG₄₅-b-ABOC₂₈ 2 ) and a non-responsive 4-fluoroaryl block copolymer (PEG₄₅-b-FBOC₂₄ 3 ) was prepared. ATRP provided the desired polymers in a highly controlled manner, whereas the RAFT conditions led to higher levels of aryl azide polymer degradation. The ATRP derived polymers 2 and 3 were formulated into nanoparticles of approximately 200 nm diameter, and particle triggering was demonstrated by the [3+2]-cycloaddition reaction of TCO with PEG₄₅-b-ABOC₂₈ 2 in solution (pure polymer) and as a formulated nanoparticle. Preliminary in vitro cell viability studies suggested that the stimuli-responsive aryl azide polymers/nanoparticles are not cytotoxic up to 200 μg/ml concentrations.     

Probing the Binding Region of the Single-Stranded DNA-Binding Domain of Rat DNA Polymerase β Using Nanosecond-Pulse Laser-Induced Cross-Linking and Mass Spectrometry

In recent years, there has been a significant number of studies in which UV light has been used as a reagent to induce cross-links in nucleic acid-protein complexes. An area of considerable interest among those interested in structural biology is the garnering of information about the sites of cross-linking within the protein and nucleic acid members of photolinked conjugates, under the assumption that such knowledge should lead to identification of contact regions or sites within the native complexes. In this paper, we present our results from a photocross-linking study of the complex of the single-stranded DNA-binding domain of rat DNA polymerase β (pol β-ss) with the oligonucleotide d(ATATATA). In this study, we have used single nanosecond laser pulses as the cross-linking reagent and matrix-assisted laser desorp-tion/ionization-time of flight mass spectrometry as an analytical tool to identify cross-linked peptides purified from proteolytic digests of the cross-linked complex. Six cross-linked peptides have been identified in tryptic digests of the protein-oligonucleotide conjugates that result from irradiation of the pol β-ss-d(ATATATA) complex with a single laser pulse. Comparisons with NMR data in the literature for the same complex show that each of the cross-linked peptides contains amino acids that are in contact with the nucleic acid component of the complex.     

New synthetic routes to cationic rhenium tricarbonyl bipyridine complexes with labile ligands

Triflate abstraction from the complex [Re(OTf)(CO)(3)(bipy)] (1) using the salt NaBAr'(4) (Ar' = 3,5-bis(trifluoromethyl)phenyl) in dichloromethane solution in the presence of L = PPh(3), NCMe, NCPh, imines, ketones, Et(2)O, THF, MeOH, and MeI affords cationic complexes [Re(L)(CO)(3)(bipy)](+) as their BAr'(4)(-) salts. The new complexes have been characterized spectroscopically and, for [Re(eta(1)-O=C(Me)R)(CO)(3)(bipy)]BAr'(4) (R = CH(3), 6a; R = Ph, 6b), and [Re(THF)(CO)(3)(bipy)]BAr'(4) (9), also by single-crystal X-ray diffraction. Compared with conventional methodologies, the route reported here allows the coordination of a broader range of weakly coordinating ligands and requires considerably milder conditions. On the other hand, the reactions of lithium acetylides with [Re(THF)(CO)(3)(bipy)]BAr'(4) (9) can be used for the high-yield syntheses of rhenium alkynyls [Re(Ctbd1;CR)(CO)(3)(bipy)] (R = Ph, 12; R = SiMe(3), 13). Complex 9 was found to catalyze the aziridination of benzylideneaniline with ethyl diazoacetate.