The triplet-state lifetime of indole in aqueous and viscous environments: significance to the interpretation of room temperature phosphorescence in proteins

The interpretation of room temperature phosphorescence studies of proteins requires an understanding of the mechanisms governing the tryptophan triplet-state lifetimes of residues fully exposed to solvent and those deeply buried in the hydrophobic core of proteins. Since solvents exposed tryptophans are expected to behave similarly to indole free in solution, it is important to have an accurate measure of the triplet state lifetime of indole in aqueous solution. Using photon counting techniques and low optical fluence (J/cm(2)), we observed the triplet-state lifetime of aqueous, deoxygenated indole and several indole derivatives to be approximately 40 micros, closely matching the previous reports by Bent and Hayon based on flash photolysis (12 micros; Bent, D. V.; Hayon, E. J. Am. Chem. Soc. 1975, 97, 2612-2619) but much shorter than the 1.2 ms lifetime observed more recently (Strambini, G. B.; Gonnelli, M. J. Am. Chem. Soc. 1995, 117, 7646-7651). However, we have now been able to reproduce the long lifetime reported by the latter workers for aqueous indole solutions and show that it likely arises from geminate recombination of the indole radical cation and solvated electron, a conclusion based on studies of the indole radical cation in water (Bent and Hayon, 1975). The evidence for this comes from a fast rise in the phosphorescence emission and measurements of a corresponding enhanced quantum yield in unbuffered solutions. This species can be readily quenched, and the corresponding fast rise disappears, leaving a monoexponential 40 micros decay, which we argue is the true indole triplet lifetime. The work is put in the context of room temperature phosphorescence studies of proteins.     

Quantum-confined electronic states in atomically well-defined graphene nanostructures

Despite the enormous interest in the properties of graphene and the potential of graphene nanostructures in electronic applications, the study of quantum-confined states in atomically well-defined graphene nanostructures remains an experimental challenge. Here, we study graphene quantum dots (GQDs) with well-defined edges in the zigzag direction, grown by chemical vapor deposition on an Ir(111) substrate by low-temperature scanning tunneling microscopy and spectroscopy. We measure the atomic structure and local density of states of individual GQDs as a function of their size and shape in the range from a couple of nanometers up to ca. 20 nm. The results can be quantitatively modeled by a relativistic wave equation and atomistic tight-binding calculations. The observed states are analogous to the solutions of the textbook "particle-in-a-box" problem applied to relativistic massless fermions.     

Radiometry and Radiation Efficiency of Twisted Gaussian Schell-Model Sources

Wavefields endowed with the coherence-induced property of optical twist have recently attracted a good deal of theoretical and experimental attention. We present the generalized radiometric theory of fields generated by twisted Gaussian Schell-model sources. The effects introduced by the novel, rotationally symmetric, twist phenomenon in the radiant intensity, generalized radiance, radiant emittance (irradiance), and the radiation efficiency are assessed. The radiance becomes directionally skewed as a result of the twist, whereas the radiant intensity remains axially symmetric. The twist reduces the radiation efficiency and broadens the radiation distribution, in agreement with the notion that the twist decreases the effective coherence. Several special cases, such as quasihomogeneous sources, are analyzed in detail. The radiometric results, which are physically consistent with the superposition models of twisted sources, are demonstrated by illustrative examples.     

Microwave backscattering by nonspherical ice particles at 5.6 GHz using second-order perturbation series

Scattering of microwaves by an ensemble of nonspherical ice particles is studied using a scattering model based on a second-order perturbation series at 5.6 GHz (C-band). Particle shapes are defined using a Gaussian random sphere geometry. Particle inhomogeneity is taken into account using three different effective-medium approximations: Maxwell–Garnett, Bruggeman, and Coherent Potential mixing rules. By systematically varying particle size, liquid water content, Gaussian shape parameters, and internal structure, it is found that liquid water content is the most important factor for the co-polarized backscattering; the shape is relatively unimportant. For depolarized backscattering, the shape is of fundamental importance, although the other factors are significant too. Surprisingly, the type of nonsphericity is found to be important for depolarization even for scatterers that are in the Rayleigh region: elongated targets depolarize clearly stronger than more irregular shapes. This finding seems not to be strongly size dependent, at least for size parameters from 0.0059 to 0.47, and indicates that the accurate modeling of shape is important for polarization quantities even in the Rayleigh region.     

Quantum-chemical gas-phase calculations on the protonation forms oftrans- andcis-urocanic acid

The neutral, cationic, and anionic structures of both prototropic tautomers oftrans- andcis-urocanic acid [(E)- and (Z)-3-(1H-imidazol-4(5)-yl)propenoic acid, respectively] were studied by using semiempirical andab initio gas-phase calculations. Potential energy surfaces of the structures were calculated by using the semiempirical AM1 method, and the geometries corresponding to global minima on these surfaces were optimized up to the MP2/6-31G^* level of theory. The calculated protonation forms of each urocanic acid isomer have a planar molecular structure due to a delocalized -electron system, and all of them prefer thes-trans conformation with respect to the bond between the imidazole and the propenoic acid moieties. Thecis-urocanic acid structures are stabilized by an intramolecular hydrogen bond. The chargedcis-urocanic acid isomers have a lower molecular energy than the correspondingtrans-isomers, whereas the neutral molecules have, after inclusion of thermodynamic corrections, approximately the same energy. The cationic urocanic acid structures have about 2500 kJ mol^–1 lower energy than the anionic ones and about 1000 kJ mol^–1 lower energy than the neutral ones. The nonzwitterionic forms of the neutral urocanic acid isomers have about 200 kJ mol^–1 lower energy than the zwitterionic ones. These energy differences are explained by the proton affinities of the imidazole and the propenoic acid moieties of the urocanic acid structures.     

Synthesis of bilin-1,19-diones and biladiene-ac-1,19-diones with c(10) adamantyl and tert-butyl groups

Bilirubin and biliverdin analogs bearing bulky adamantyl and tert-butyl groups at the central C(10) position were synthesized and their structures were analyzed by nmr and ultraviolet-visible spectroscopy and by molecular mechanics calculations, all of which collectively indicated a preference for helical conformations.     

Indoloquinolizidine synthesis : Stereochemistry and mechanism of cyclisation

A stereocontrolled cyclisation of suitably substituted indole derivatives can be explained by the revised Pictet-Spengler reaction mechanism.     

Determination of talc in geological samples by infrared spectrometry

Talc is determined by infrared spectrometry in talc ore and mineral mixtures containing clinochlore chlorite, dolomite and magnesite as major minerals. When the Si-O-Si vibration at 668 cm^?1 is used, the calibration graph is linear up to about 0.5 mg of talc. Band overlap from chlorite is corrected by using the ratio of absorbances at 668 and 3620 cm^?1. Talc (?15%) in talc/carbonate/chlorite mixtures and ore was determined with relatively good precision and accuracy (recovery 91.2–97.4%). The sample sizes were 0.5–1 mg for 40–60% talc and 0.5–1.5 mg for 7.5–15% talc. The recoveries were worse (84.0–94.6%) for < 15% talc. The precision for unknown samples of talc ore varied from 1.5 to 4.0% (n=4).     

Designed Topology and Site‐Selective Metal Composition in Tetranuclear [MM′⋅⋅⋅M′M] Linear Complexes

The ligand 1,3‐bis[3‐oxo‐3‐(2‐hydroxyphenyl)propionyl]benzene (H₄L), designed to align transition metals into tetranuclear linear molecules, reacts with M^II salts (M=Ni, Co, Cu) to yield complexes with the expected [MM???MM] topology. The novel complexes [Co₄L₂(py)₆] ( 2 ; py=pyridine) and [Na(py)₂][Cu₄L₂(py)₄](ClO₄) ( 3 ) have been crystallographically characterised. The metal sites in complexes 2 and 3 , together with previously characterised [Ni₄L₂(py)₆] ( 1 ), favour different coordination geometries. These have been exploited for the deliberate synthesis of the heterometallic complex [Cu₂Ni₂L₂(py)₆] ( 4 ). Complexes 1 , 2 , 3 and 4 exhibit antiferromagnetic interactions between pairs of metals within each cluster, leading to S=0 spin ground states, except for the latter cluster, which features two quasi‐independent S=1/2 moieties within the molecule. Complex 4 gathers the structural and physical conditions, thus allowing it to be considered as prototype of a two‐qbit quantum gate.