Molecular dynamics simulations for human CAR inverse agonists

Constitutive androstane receptor (CAR), along with pregnane x receptor (PXR), is an important metabolic sensor in the hepatocytes. Like all other nuclear receptors (NRs), CAR works in concert with coregulator proteins, coactivators, and corepressors which bind to the NRs. The main basis for the receptor to distinguish between coactivators and corepressors is the position of the C-terminal helix 12 (H12), which is determined by the bound NR ligand. CAR, having constitutive activity, can be repressed or further activated by its ligands. Crystal structure of human CAR bound to an agonist and a coactivator peptide is available, but no structural information on an inverse agonist-bound human CAR and a corepressor exists. In our previous molecular dynamics (MD) studies, no corepressor peptide was included. Therefore, probably due to the strong interactions which keep the relatively short H12 of CAR in the active position, the structural changes elicited by inverse agonists were very subtle, and H12 of CAR seemed to more or less retain its active conformation. Here, we have run a series of MD simulations to study the movement of H12 in the presence of both activating and repressing ligands as well as a corepressor peptide. The presence of the corepressor on the coregulator surface of CAR induced a clear shift of H12 of the inverse agonists-bound CAR. In general, H12 moved toward H10 and not away from the ligand binding domain, as seen in some other NRs. However, H12 of CAR is short enough that this movement seems to be adequate to accommodate the binding of the corepressor.     

Hydrophobic modification of nanocellulose and all-cellulose composite films using deep eutectic solvent as a reaction medium

Cellulose - In this work, deep eutectic solvent (DES) based on imidazole and triethylmethylammonium chloride was used as a reaction medium for the esterification of cellulose nanofiber (CNF) and...     

The role of MFC/NFC swelling in the rheological behavior and dewatering of high consistency furnishes

The influence of swelling on the rheological and dewatering properties of high consistency nanocellulose based furnishes is considered. Different consistencies of suspensions (1–4 %) and furnishes (5–15 %) were prepared made of two distinctly different grades of nanocellulose containing, micro fibrillated (MFC) and nanofibrillated (NFC) cellulose, and systematic comparison between the rheological and dewatering parameters was conducted. The characterization of the rheological and dewatering properties was performed with a stress controlled rheometer combined with an immobilization cell in parallel plate geometry, as well as with an independent gravimetric dewatering device. The surface charge of nanofibrillated cellulose was found to influence the rheological and dewatering properties of the evaluated suspensions and furnishes due to its impact on swelling and effectively bound water. Due to the complex behavior of the novel materials, the immobilization times were difficult to determine from the changes in the damping factor, as often used for coating colors. Instead, we propose a modified method for determination of immobilization times based on a rheological analysis adopting the rate of change in viscoelastic loss factor over time, d(tan δ = G′′/G′)/dt, describing the critical point(s) in the ratio of the viscous to elastic stress response moduli. With this approach we show that it is possible to characterize immobilization of these materials incorporating the concept of the combined physical interactions of the components and the non-removable bound water, without requiring a direct measure of the nanocellulose surface swelling. Based on the results, we hypothesize that fibrillar swelling impacts the dewatering of MFC and NFC suspensions, and furnishes containing them, by an interfiber pore connectivity blocking/sealing mechanism, which effectively defines the immobilization of the material matrix at the end point of free water extraction caused by the physical blocking imposed by the remaining bound water.     

Size‐Selective Encapsulation of Hydrophobic Guests by Self‐Assembled M4L6 Cobalt and Nickel Cages

Subtle differences in metal–ligand bond lengths between a series of [M₄L₆]^4? tetrahedral cages, where M=Fe^II, Co^II, or Ni^II, were observed to result in substantial differences in affinity for hydrophobic guests in water. Changing the metal ion from iron(II) to cobalt(II) or nickel(II) increases the size of the interior cavity of the cage and allows encapsulation of larger guest molecules. NMR spectroscopy was used to study the recognition properties of the iron(II) and cobalt(II) cages towards small hydrophobic guests in water, and single‐crystal X‐ray diffraction was used to study the solid‐state complexes of the iron(II) and nickel(II) cages.     

Synthesis and biomimetic mineralization of l‐proline substituted polyphosphazenes as bulk and nanofiber

This work presents the synthesis of polyphosphazenes bearing L ‐proline methyl ester (ProOMe) and 4‐hydroxy‐l ‐proline methyl ester (HypOMe), aiming for new bioactive polymers for bone repair. The polymers were characterized by ¹H and ³¹P NMR, FTIR, DSC, and TGA. Electrospun fibers were prepared using poly[bis(l ‐proline methyl ester)phosphazene] (PProP), and their potential for biomimetic mineralization, as well as the bulk material, were tested in simulated body fluid (1×SBF). Samples were analyzed between 24 h and 3 weeks of incubation using SEM/EDS and FTIR. After 24 h, spherical and flower‐like shapes of calcium phosphates (CaP) were crystallized on the bulk samples. The nanofibers presented spherical CaP crystals attached to them after 48 h of incubation. The Ca/P molar ratio of the crystals varied from 1.5 to 1.6. According to this study, PProP presents bioactivity in vitro, and its fibers offer sites for CaP nucleation like the collagen fibers in bone. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2013 , 51, 1318–1327     

The [U2F12]2− Anion of Sr[U2F12]

The D_2h‐symmetric dinuclear complex anion [U₂F₁₂]^2? of pastel green Sr[U₂F₁₂] shows a hitherto unknown structural feature: The coordination polyhedra around the U atoms are edge‐linked monocapped trigonal prisms, the U^V atoms are therefore seven‐coordinated. This leads to a U–U distance of 3.8913(6) Å. A weak U^V–U^V interaction is observed for the dinuclear [U₂F₁₂]^2? complex and described by the antiferromagnetic exchange J_exp of circa ?29.9 cm^?1. The crystalline compound can be easily prepared from SrF₂ and β‐UF₅ in anhydrous hydrogen fluoride (aHF) at room temperature. It was studied by means of single crystal X‐ray diffraction, IR, Raman and UV/VIS spectroscopy, magnetic measurements, and by molecular as well as by solid‐state quantum chemical calculations.     

Improving the mechanical properties of CNF films by NMMO partial dissolution with hot calender activation

Reinforcing of cellulose nanofibril (CNF) films by partial dissolution with N-methylmorpholine-N-oxide (NMMO) was investigated. The method investigated is composed of impregnation of CNF film with liquid solution of NMMO followed by dry heat activation. The heat activation of the impregnated film was carried out using a heated calendering nip, which enabled simultaneous heating and compression. The partial dissolution of cellulose by NMMO caused a significant increase in the transparency of CNF film due to the decrease of film porosity and increased surface smoothness. The dry strength of the reinforced film was increased from 122 up to 195 MPa. Furthermore, the wet strength of the reinforced film was up to 70% greater than the dry strength of pure CNF film. The changes in the fibrillar structure were investigated with topographical imaging (SEM and AFM) and spectroscopically using NMR and FTIR. No significant changes in the fibril structure or cellulose morphology were observed. Moreover, the treated film resisted significant water pressure, highlighting CNF film’s permanent water resistance. The partial dissolution process with NMMO was also capable of reinforcing a CNF composite film with macro scale structural elements (lyocell short-cut fibres). The strategy investigated is a robust and fast method to improve the mechanical properties of fibrillary cellulose films, allowing them utilization in applications where improved water resistance and fully cellulosic character are required properties.     

Eigenvalue confinement and spectral gap for random simplicial complexes

We consider the adjacency operator of the Linial‐Meshulam model for random simplicial complexes on n vertices, where each d‐cell is added independently with probability p to the complete ‐skeleton. Under the assumption , we prove that the spectral gap between the smallest eigenvalues and the remaining eigenvalues is with high probability. This estimate follows from a more general result on eigenvalue confinement. In addition, we prove that the global distribution of the eigenvalues is asymptotically given by the semicircle law. The main ingredient of the proof is a Füredi‐Komlós‐type argument for random simplicial complexes, which may be regarded as sparse random matrix models with dependent entries. © 2017 Wiley Periodicals, Inc. Random Struct. Alg., 51, 506–537, 2017     

Local Semicircle Law for Random Regular Graphs

We consider random d‐regular graphs on N vertices, with degree d at least (log N)⁴. We prove that the Green's function of the adjacency matrix and the Stieltjes transform of its empirical spectral measure are well approximated by Wigner's semicircle law, down to the optimal scale given by the typical eigenvalue spacing (up to a logarithmic correction). Aside from well‐known consequences for the local eigenvalue distribution, this result implies the complete (isotropic) delocalization of all eigenvectors and a probabilistic version of quantum unique ergodicity.© 2017 Wiley Periodicals, Inc.