Atmospheric reaction of the HOSO radical with NO2: a theoretical study

The gas-phase reaction between HOSO and NO(2) was examined using density functional theory. Geometry optimizations and frequency computations were performed at the B3LYP/6-311++G(2df,2pd) level of theory for all minimum species and transition states. The ground-state potential energy surface, including activation energies and enthalpies, were calculated using the ab initio CBS-QB3 composite method. The results suggest that the addition of HOSO and NO(2) leads to two possible intermediates, HOS(O)NO(2) and HOS(O)ONO, without any energy barrier. The HOS(O)NO(2) easily decomposes into HONO + SO(2) through the low energy product complex HONO···SO(2), whereas the HOS(O)ONO dissociates to HOSO(2) + NO products. This latter dissociation is preferred from the isomerization of the HOS(O)ONO to HOS(NO)O(2). Also, HOS(O)NO(2) isomerization to HOS(O)ONO is hindered due to the presence of a large energy barrier. From the thermodynamic aspect, the main products in the title reaction are HONO + SO(2), whereas HOSO(2) + NO are expected as a minor products.     

The large scale conformational change of the human DPP III-substrate prefers the "closed" form

Human dipeptidyl peptidase III (DPP III) is a two domain metallo-peptidase from the M49 family. The wide interdomain cleft and broad substrate specificity suggest that this enzyme could experience significant conformational change. Long (>100 ns) molecular dynamics (MD) simulations of DPP III revealed large range conformational changes of the protein, suggesting the pre-existing equilibrium model for a substrate binding. The binding free energy calculations revealed tighter binding of the preferred synthetic substrate Arg-Arg-2-naphtylamide to the "closed" than to the "open" DPP III conformation. Our assumption that Asp372 plays a crucial role in the large scale interdomain closure was proved by the MD simulations of the Asp372Ala variant. During the same simulation time, the variant remained more "open" than the wild type protein. Apparently, Ala was not as efficient as Asp in establishing the interdomain interactions. According to the MM-PBSA calculations, the electrostatic component of the free energy of solvation turned out to be higher for the "closed" protein than for its less compact form. However, the gain in entropy due to water released from the interdomain cleft nicely balanced this negative effect.     

Ag60纳米颗粒[{Cl@Ag12}@Ag48(dppm)12]的结构(其中dppm=双(二苯基膦基)甲烷

本文合成一种新的双膦连接Ag₆₀纳米团簇[{Cl@Ag₁₂}@Ag₄₈(dppm)₁₂],并通过X射线晶体学进行表征. 二十面体的银处于核心位置,里面是中心氯化物组成,外面有48 个银原子/离子的包裹,顶端是12个双(二苯基膦基)甲烷(dppm)配体. 同时利用密度泛函理论对阳离子[{Cl@Ag₁₂}@Ag₄₈(dppm)₁₂]⁺进行计算,以确定该结构是否对应于核心数n=58的超原子. DFT计算的优化结构与X射线一致,但是HOMO-LUMO的能差并不能保证其超级稳定性.     

Photochemical Reactivity of Naphthol-Naphthalimide Conjugates and Their Biological Activity

Quinone methide precursors 1a–e, with different alkyl linkers between the naphthol and the naphthalimide chromophore, were synthesized. Their photophysical properties and photochemical reactivity were investigated and connected with biological activity. Upon excitation of the naphthol, Förster resonance energy transfer (FRET) to the naphthalimide takes place and the quantum yields of fluorescence are low (Φ_F ≈ 10⁻²). Due to FRET, photodehydration of naphthols to QMs takes place inefficiently (Φ_R ≈ 10⁻⁵). However, the formation of QMs can also be initiated upon excitation of naphthalimide, the lower energy chromophore, in a process that involves photoinduced electron transfer (PET) from the naphthol to the naphthalimide. Fluorescence titrations revealed that 1a and 1e form complexes with ct-DNA with moderate association constants K_a ≈ 10⁵–10⁶ M⁻¹, as well as with bovine serum albumin (BSA) K_a ≈ 10⁵ M⁻¹ (1:1 complex). The irradiation of the complex 1e@BSA resulted in the alkylation of the protein, probably via QM. The antiproliferative activity of 1a–e against two human cancer cell lines (H460 and MCF 7) was investigated with the cells kept in the dark or irradiated at 350 nm, whereupon cytotoxicity increased, particularly for 1e (>100 times). Although the enhancement of this activity upon UV irradiation has no imminent therapeutic application, the results presented have importance in the rational design of new generations of anticancer phototherapeutics that absorb visible light.     

Synthesis and Structures of the Novel Pyridoxal Oxime Derivatives

Novel pyridoxal oxime derivatives were prepared and characterized by means of IR, ¹H and ¹³C NMR spectroscopy. The crystal structures of the 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium iodide 1 and 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium chloride monohydrate 2 were determined by X-ray analysis. The both compounds crystallize in the triclinic crystal system, space group P . Crystal data: 1 a = 6.286(2) Å, b = 8.748(4) Å, c = 11.736(4) Å, = 104.02(3)°, = 94.70(3)°, = 107.44(6)°, V = 589.0(4) ų, Z = 2, R = 0.0526; 2 a = 6.8980(5) Å, b = 8.6409(6) Å, c = 11.1777(6) Å, = 111.138(5)°, = 93.114(6)°, = 105.158(5)°, V = 591.57(7) ų, Z = 2, R = 0.0492. The bond distances and angles in both structures agree very well. The main difference between these structures was observed in the orientation of the hydroxymethyl group with respect to the pyridinium ring. In the both structures intramolecular hydrogen bond forming six-membered ring were observed. The intermolecular OsI hydrogen bonds in the crystal structure of the compound 1 form dimers. In the crystal structure of compound 2, the water molecules and chlorines build eight-membered rings, which are also connected to pyridinium cations by OsCl and OsO intermolecular hydrogen bonds forming a three-dimensional network.     

Synthesis and electrical properties of Li1+ x M x Ti2– x (PO4)3 (where M =Sc, Al, Fe, Y; x =0.3) superionic ceramics

Compounds of the system Li_{1+ x} M _x Ti_{2– x} (PO₄)₃ (where M=Sc, Al, Fe, Y; x=0.3) were synthesized by a solid-state reaction and studied by X-ray diffraction. The ceramic samples were sintered and investigated by complex impedance spectroscopy in the frequency range 10⁶–1.2×10⁹ Hz in the temperature range 300–600 K. Two relaxation dispersions related to the fast Li⁺ ion transport in bulk and grain boundaries were found. The activation energies of the bulk conductivity and relaxation frequency were obtained from the slops of Arrhenius plots. The values of the activation energies of the bulk ionic conductivity and relaxation frequency were found to be very similar in all the materials investigated. That can be attributed to the fact that the temperature dependences of the bulk conductivity are caused only by the mobility of the fast Li⁺ ions, while the number of charge carriers remains constant with temperature. Electronic Publication     

Enthalpy of the gas-phase CO2 + Mg reaction from ab initio total energies

Various highly accurate ab initio composite methods of Gaussian-n (G1, G2, G3), their variations (G2(MP2), G3(MP2), G3//B3LYP, G3(MP2)//B3LYP), and complete basis set (CBS-Q, CBS-Q//B3LYP) series of models were applied to compute reaction enthalpies of the ground-state reaction of CO2 with Mg. All model chemistries predict highly endothermic reactions, with DeltaH(298) = 63.6-69.7 kcal x mol(-1). The difference between the calculated reaction enthalpies and the experimental value, evaluated with recommended experimental standard enthalpies of formation for products and reactants, is more than 20 kcal x mol(-1) for all methods. This difference originates in the incorrect experimental enthalpy of formation of gaseous MgO given in thermochemical databases. When the theoretical formation enthalpy for MgO calculated by a particular method is used, the deviation is reduced to 1.3 kcal x mol(-1). The performance of the methodologies used to calculate the heat of this particular reaction and the enthalpy of formation of MgO are discussed.     

Synthesis and Crystal Structure Determination of 6-(N-Isopropyl)Amidino-2-Methylbenzothiazole Hydrochloride Monohydrate and 2-Amino-6-(N-Isopropyl)Amidinobenzothiazole Hydrochloride

Two novel substituted amidino-benzothiazoles 6-(N-isopropyl)amidino-2-methylbenzothiazole 4 and 2-amino-6-(N-isopropyl)amidinobenzothiazole 6 were prepared in multistep synthesis in form of hydrochloride salts. They were characterized by means of IR, ¹H, and ¹³C-NMR spectroscopy and elemental analysis. The crystal structures have been also determined by X-ray analysis. Both compounds crystallize as colorless prisms in the triclinic crystal system, space group P . Crystal data: (4) a = 8.741(4) Å, b = 9.602(7) Å, c = 9.946(2) Å, = 63.94(3)°, = 79.18(2)°, = 79.68(3)°, V = 732.1(6) ų, Z = R = 0.0396; a = 8.106(1) Å, b = 9.148(2) Å, c = 9.291(2) Å, = 104.83(1)°, = 103.36(2)°, = 90.62(1)°, V = 646.2(2) ų , Z = 2, R = 0.0376. The bond distances and angles in both structures are almost similar. Between these two structures was found the difference in the orientation of the 6-(N-isopropyl)amidino moiety with respect to the benzothiazole ring. In the crystal structures of the both compounds the intermolecular hydrogen bonds form three-dimensional networks.     

Hydrogen bonding in the hydroxysulfinyl radical‐formic acid‐water system: A theoretical study

Quantum chemical methods have been employed to evaluate the possible configurations of the 1:1 and 1:2 HOSO‐formic acid complexes and 1:1:1 HOSO‐formic acid‐water complexes. The first type of complex involves two H bonds, while the other two types comprise three H bonds in a ring. The complexes are relatively stable, with CBS‐QB3 computed binding energies of 14.3 kcal mol^?1, 23.4 kcal mol^?1, and 21.1 kcal mol^?1 for the lowest‐energy structures of the 1:1, 1:2, and 1:1:1 complexes, respectively. Complex formations induce a large spectral red‐shift and an enhancement of the IR intensity for the H‐bonded OH stretching modes relative to those in the parent monomers. TDDFT calculations of the low‐lying electronic excited states demonstrate that the complexes are photochemically quite stable in the troposphere. Small spectral shifts in comparison to the free HOSO radical suggest that the radical and the complexes would not be easily distinguishable using standard UV/vis absorption spectroscopy. © 2016 Wiley Periodicals, Inc.