Identification of Potential HCV Inhibitors Based on the Interaction of Epigallocatechin-3-Gallate with Viral Envelope Proteins

Hepatitis C is affecting millions of people around the globe annually, which leads to death in very high numbers. After many years of research, hepatitis C virus (HCV) remains a serious threat to the human population and needs proper management. The in silico approach in the drug discovery process is an efficient method in identifying inhibitors for various diseases. In our study, the interaction between Epigallocatechin-3-gallate, a component of green tea, and envelope glycoprotein E2 of HCV is evaluated. Epigallocatechin-3-gallate is the most promising polyphenol approved through cell culture analysis that can inhibit the entry of HCV. Therefore, various in silico techniques have been employed to find out other potential inhibitors that can behave as EGCG. Thus, the homology modelling of E2 protein was performed. The potential lead molecules were predicted using ligand-based as well as structure-based virtual screening methods. The compounds obtained were then screened through PyRx. The drugs obtained were ranked based on their binding affinities. Furthermore, the docking of the topmost drugs was performed by AutoDock Vina, while its 2D interactions were plotted in LigPlot+. The lead compound mms02387687 (2-[[5-[(4-ethylphenoxy) methyl]-4-prop-2-enyl-1,2,4-triazol-3-yl] sulfanyl]-N-[3(trifluoromethyl) phenyl] acetamide) was ranked on top, and we believe it can serve as a drug against HCV in the future, owing to experimental validation.     

Pyrimidinetrione-imidazoles as a Unique Structural Type of Potential Agents towards Candida Albicans: Design,Synthesis and Biological Evaluation

Substantial morbidity and mortality of fungal infections have aroused concerns all over the world, and common Candida spp. currently bring about severe systemic infections. A series of pyrimidinetrione-imidazole conjugates as potentially antifungal agents were developed. Bioassays manifested that 4-fluobenzyl pyrimidinetrione imidazole 5 f exerted favorable inhibition towards C. albicans (MIC=0.002 mM), being 6.5 folds more active than clinical antifungal drug fluconazole (MIC=0.013 mM). Preliminary mechanism research indicated that compound 5 f could not only depolarize membrane potential but also permeabilize the membrane of C. albicans. Molecular docking was operated to simulate the interaction mode between molecule 5 f and CYP51. In addition, hybrid 5 f might form 5 f -DNA supramolecular complex via intercalating into DNA. The interference of membrane and DNA might contribute to its fungicidal capacity with no obvious tendency to induce the resistance against C. albicans. Conjugate 5 f endowed good blood compatibility as well as low cytotoxicity towards HeLa and HEK-293T cells.     

Some generalizations of Ekeland-type variational principle with applications to equilibrium problems and fixed point theory

In this paper, we introduce the concept of a Q$Q$-function defined on a quasi-metric space which generalizes the notion of a τ$\tau$-function and a w$w$-distance. We establish Ekeland-type variational principles in the setting of quasi-metric spaces with a Q$Q$-function. We also present an equilibrium version of the Ekeland-type variational principle in the setting of quasi-metric spaces with a Q$Q$-function. We prove some equivalences of our variational principles with Caristi–Kirk type fixed point theorems for multivalued maps, the Takahashi minimization theorem and some other related results. As applications of our results, we derive existence results for solutions of equilibrium problems and fixed point theorems for multivalued maps. We also extend the Nadler’s fixed point theorem for multivalued maps to a Q$Q$-function and in the setting of complete quasi-metric spaces. As a consequence, we prove the Banach contraction theorem for a Q$Q$-function and in the setting of complete quasi-metric spaces. The results of this paper extend and generalize many results appearing recently in the literature.     

Novel crown-containing porphyrin and its complexes with transition metals

The novel crown-containing porphyrin 5-{4-[(4-hydroxybenzo-15-crown-5)-5-yldiazo]phenyl}-10,15,20-triphenylporphyrin (H₃L) and its transition metal complexes MHL (M = Co(II), Ni(II), Cu(II), and Zn(II)) and AgH₂L were obtained. The compositions and structures of all the compounds were studied by MALDI-TOF mass spectroscopy, electronic absorption and IR spectroscopy. The diamagnetic compounds were additionally characterized by ¹H NMR spectroscopy. It was proved that Co(II), Ni(II), Cu(II), and Zn(II) are coordinated through the pyrrole N atoms, while Ag(I) is coordinated through the hydroxyl O atom and the diazo N atom of H₃L.     

A Robust Electrochemical Sensor Based on Butterfly-shaped Silver Nanostructure for Concurrent Quantification of Heavy Metals in Water Samples

Heavy metals in drinking water have become a severe threat to human health. Detection of heavy metals has been achieved by electrochemical sensors that are modified with complex nanocomposites; however, reproducibility of these sensors is still a big challenge when applied in commercial settings. Here, a simple, very robust, and sensitive electrochemical sensor based on a screen-printed carbon electrode modified with butterfly-shaped silver nanostructure (AgNS/SPCE) has been developed for the concurrent determination of cadmium (II), lead (II), copper (II), and mercury (II) in water samples. The electrochemical behavior of the modified electrodes was investigated using cyclic voltammetry and differential pulse anodic stripping voltammetry. The AgNS/SPCE showed distinct peak potentials and a significant increase in the peak currents for all heavy metals, attributed to the high electrical conductivity and electrocatalytic activity of the synthesized butterfly-shaped AgNS. Moreover, the excellent stability and sensitivity towards simultaneous quantification of heavy metals have been obtained with detection limits of 0.4 ppb, 2.5 ppb, 7.3 ppb, and 0.7 ppb for Cd (II), Pb (II), Cu (II), and Hg (II), respectively. Besides, the constructed sensor was successfully applied to simultaneously quantify target heavy metals in spiked water samples. Owing to excellent sensitivity, high robustness, affordability, and fast response, the presented electrochemical sensor could be incorporated into a portable and miniaturized potentiostat device, making it a promising method for on-site water analysis.     

Diverse Reactivity of bis(Silylene) and bis(Germylene) [LE−EL (E=Si and Ge: L=PhC(NtBu)2)] in the Oxidative Activation of C−F Bond: Si−Si Bond is Retained While the Ge−Ge Bond Is Cleaved

Herein we report the reactions of 3,4,5,6-tetrafluoroterephthalonitrile ( 1 ) with bis(silylene) and bis(germylene) LE−EL [E=Si ( 2 ) and Ge( 3 ): L=PhC(N^tBu)₂)]. The reaction of LSi−SiL (L=PhC(N^tBu)₂) ( 2 ) with two equivalents of 1 resulted in an unprecedented oxidative addition of a C−F bond of 1 leading to disilicon(III) fluoride {L(4-C₈F₃N)FSi−SiF(4-C₈F₃N)L}( 4 ), wherein the Si−Si single bond was retained. In contrast, the reaction of LGe−GeL (L=PhC(N^tBu)₂) ( 3 ) with one equivalent of 1 resulted in the oxidative cleavage of Ge−Ge bond leading to L(4-C₈F₃N₂)Ge ( 5 ) and LGeF ( 6 ). All three compounds ( 4 – 6 ) were characterized by NMR spectroscopy, EI-MS spectrometry, and elemental analysis. X-ray single-crystal structure determination of compound 4 unequivocally established that the Si^III−Si^III bond remains uncleaved.     

Dynamic rheological properties of a fumed silica grease

The thermo-rheological characteristics of a fumed silica lubricating grease in linear and nonlinear oscillatory experiments have been investigated. The material rheological behavior represents a soft solid being thermo-rheologically complex. There is an abnormal temperature dependency in the range of ??10 to 10 °C which is related to the phase transition of the base oil. The dynamic moduli data in linear viscoelastic envelop (LVE) have been modeled using mode-coupling theory (MCT) in the whole temperature range. Two main relaxation mechanisms can be identified through linear and nonlinear viscoelastic properties related to interaction of the primary particle and its neighbor particles as well as a slow relaxation process which represents the escape of this particle from its “cage”. Finally, it is demonstrated that the dominant yielding process in large amplitude oscillatory experiments can be explained based on either particle cage rupture (consistent with MCT framework) or particle “hopping” out of its cage proposed in soft glassy rheology (SGR) model. It will be discussed that the governing mechanism depends on the applied frequency.     

Buckling Behavior of Carbon Nanotubes Functionalized with Carbene under Physical Adsorption of Polymer Chains: a Molecular Dynamics Study

The buckling analysis of functionalized carbon nanotubes (CNTs) is of great importance for the better understanding of mechanical behavior of nanocomposites. The buckling behavior of carbene-functionalized CNTs (cfCNTs) under physical adsorption of polymer chains (cfCNTs/polymers) is studied in this paper by the classical molecular dynamics (MD) simulations. In this regard, to investigate the interactions between non-covalent polymer chains and cfCNTs, two different non-covalent functional groups, i.e. polycarbonate (PC) and polypropylene (PP), are selected. The findings are compared with those of pure CNTs under the physical adsorption of polymer chains (pCNTs/polymers). The obtained results show that at a given weight percentage of non-covalent functional groups, the gyration radius of cfCNTs/polymers is higher than that of pCNTs/polymers. Furthermore, an increase in the critical buckling force of cfCNTs/polymers is dependent on the type of non-covalent polymer chains. For cfCNTs/PC and cfCNTs/PP, the critical buckling force is respectively lower and higher than that of pCNTs/polymers for the similar weight percentage of non-covalent functional groups. In addition, it is found that the critical buckling strain of cfCNTs/polymers is smaller than that of pCNTs/polymers for the same weight percentage of non-covalent polymer chains.     

Bending analysis of functionally graded CNT reinforced doubly curved singly ruled truncated rhombic cone

The bending analysis of functionally graded carbon nanotube (CNT) reinforced doubly curved singly ruled truncated rhombic cone is investigated. In this study, a simple C⁰ isoparametric finite element formulation based on third order shear deformation theory is presented. To characterize the membrane-flexure behavior observed in a CNT reinforced truncated rhombic cone, a displacement field involving higher-order terms in in-plane fields is considered. The proposed kinematics field incorporates for transverse shear deformation and nonlinear variation of the in-plane displacement field through the thickness to predict the overall response of the CNT reinforced truncated rhombic cone in an accurate sense. The material properties of the CNT reinforced truncated rhombic cone are estimated according to the rule of mixture. The present model eliminates the need of shear correction factor and imposed zero-transverse shear strain at upper and lower surface of the truncated rhombic cone. The new feature in present model is simultaneous inclusion of twist curvature in strain field as well as curvature in displacement field that makes it suitable for moderately thick and deep truncated rhombic cone. The proposed new mathematical model is implemented in finite element code written in FORTRAN. The proposed model has been validated with analytical, experimental, and finite element results from the literature. This is first attempt to study bending response of CNT reinforced doubly curved singly ruled truncated rhombic cone. The effect of CNT distribution, boundary condition, loading pattern, and other geometric parameters are also examined.     

Salivary MMP-9 Levels in Chronic Periodontitis Patients with Type-II Diabetes Mellitus

Chronic periodontitis and diabetes mellitus share a two-way relationship, the common factor being the inflammatory-mediated pathway, and various cytokines are released during this inflammatory cascade, one of which being matrix metalloproteinase-9. The aim of this study was to identify whether the levels of matrix metalloproteinase-9 are increased due to type-II diabetes mellitus in chronic periodontitis patients. It was an observational, analytical, case-control study. Thirty subjects were recruited in the test group, who were suffering from type-II diabetes mellitus and chronic periodontitis, and 30 subjects in the control group, who were subjects with chronic periodontitis but systemically healthy. Periodontal parameters, including the plaque score, gingival bleeding index, probing pocket depth and clinical attachment level of the subjects, were measured, saliva samples of all of the subjects were collected and salivary matrix metalloproteinase-9 levels were analyzed by an enzyme-linked immunosorbent assay (ELISA) technique. The statistical analysis was performed using SPSS 24. Overall, the matrix metalloproteinase-9 levels of the diabetic patients with chronic periodontitis were increased almost twofold (156.95 ± 29.80 ng/mL) compared to the levels in the controls (74.96 ± 6.32 ng/mL) (p < 0.001). Similarly, the periodontal parameters were far worse in diabetics with chronic periodontitis compared to the controls. The average gingivitis score for the test subjects was 78.45 ± 8.93%), compared to 29.32 ± 12.96% in the controls (p < 0.001). The mean probing pocket depth for the test group was 5.39 ± 0.60 mm, and, for the control group, it was 4.35 ± 0.31 mm (p < 0.001). For the test subjects, the average clinical attachment level was 5.86 ± 0.58 mm, and it was 4.66 ± 0.32 mm for the controls (p < 0.001). It was ascertained that there is a two-fold increase in the levels of salivary matrix metalloproteinase-9 in the test group compared to the control group. In addition, the level of periodontal apparatus destruction was greater in the test group. This proved that type-II diabetes mellitus influences the levels of matrix metalloproteinase-9 in humans and elevates them, causing further periodontal destruction.