Efficient Synthesis of New Nucleoside Analogues with a Methylenecyclobutane Unit

Synthesis of eight nucleoside analogues 4–11 with a methylenecyclobutane unit is described. Wittig reaction with 2‐hydroxymethylcyclobutanone 12 gave a mixture of Z (13) and E (14) derivatives, which was separated before functional modifications. The heterocyclic moieties were introduced via a Mitsunobu reaction either on the saturated chain or on the unsaturated chain. When adenine was used in this reaction, only the N‐9 substitution products were obtained. Removal of the protecting groups provided the target products.     

Preparation of the N-(2-Bromo-2-Nitroethenyl) Benzenamine: The First One-Pot Synthesis of a β-Halo-β-Nitroenamine

Bromonitromethane, triethyl orthoformate and aniline react together, in a one-flask procedure, to afford the title compound.     

Emulsions of Heavy Crude Oils. II. Viscous Responses and Their Influence on Emulsion Stability Measurements

The stability of 30 heavy crude oil emulsions was studied in a parallel-plate laboratory coalescer (DC field). Particularly, viscous responses and their influence on the emulsion stability measurements were investigated. In addition to highlighting previous results from the same experimental setup and discussing these based on recent experience, new results at different temperatures and volume fractions of water were presented. A new semi-empirical model for the characteristic time of the destabilization process was presented. The electrical forces were modelled with a point-dipole approximation and the hydrodynamic resistance to droplet transport was modelled with an empirical term including the logarithmic viscosity of the oil phase. The new model clearly performed much better than the previous model, particularly for very viscous crude oils. Studies of the performance of industrial electrocoalescers have showed that simple electrostatic theory can potentially explain complex separation phenomena when the resistance to the coalescence step is reduced by an efficient demulsifier. The ultimate goal is to build a model for both the laboratory setup and the industrial coalescer so that laboratory experiments can be used to predict the behavior of the industrial process.     

Stability of Water/Crude Oil Systems Correlated to the Physicochemical Properties of the Oil Phase

A characterization of 30 crude oils has been performed to determine the relative level of influence that individual parameters have over the overall stability of w/o emulsions. The crude oils have been analyzed with respect to bulk and interfacial properties and the characteristics of their w/o emulsions. The parameters include compositional properties, acidity, spectroscopic signatures in the infrared and near‐infrared region, density, viscosity, molecular weight, interfacial tension, dilational relaxation, droplet size distribution, and stability to gravitationally and electrically induced separation. As expected, a strong covariance between several physicochemical properties was found. Near‐infrared spectroscopy proved to be an effective tool for crude oil analysis. In particular, we have showed the importance of the hydrodynamic resistance to electrically‐induced separation (static) in heavy crude oil‐water emulsions. A rough estimate of the drag forces and dielectrophoretic forces seemed to capture the difference between the 30 crude oils. Given enough time, water‐in‐heavy oil emulsions could be destabilized even at very low electric field magnitude (d.c.). When droplets approach each other in an inhomogeneous electric field, strong dielectrophoretic forces disintegrate the films and result in coalescence. The relative contribution from film stability to the overall emulsion stability may therefore be very different in a gravitational field compared to that in an electrical field.     

Atoms of multistationarity in chemical reaction networks

Chemical reaction systems are dynamical systems that arise in chemical engineering and systems biology. In this work, we consider the question of whether the minimal (in a precise sense) multistationary chemical reaction networks, which we propose to call ‘atoms of multistationarity,’ characterize the entire set of multistationary networks. Our main result states that the answer to this question is ‘yes’ in the context of fully open continuous-flow stirred-tank reactors (CFSTRs), which are networks in which all chemical species take part in the inflow and outflow. In order to prove this result, we show that if a subnetwork admits multiple steady states, then these steady states can be lifted to a larger network, provided that the two networks share the same stoichiometric subspace. We also prove an analogous result when a smaller network is obtained from a larger network by ‘removing species.’ Our results provide the mathematical foundation for a technique used by Siegal- Gaskins et al. of establishing bistability by way of ‘network ancestry.’ Additionally, our work provides sufficient conditions for establishing multistationarity by way of atoms and moreover reduces the problem of classifying multistationary CFSTRs to that of cataloging atoms of multistationarity. As an application, we enumerate and classify all 386 bimolecular and reversible two-reaction networks. Of these, exactly 35 admit multiple positive steady states. Moreover, each admits a unique minimal multistationary subnetwork, and these subnetworks form a poset (with respect to the relation of ‘removing species’) which has 11 minimal elements (the atoms of multistationarity).     

Synthesis of Artificial Glycoconjugate Polymers Carrying 6-O-Phosphocholine α-D-Glucopyranoside,Biologically Active Segment of Main Cell Membrane Glycolipids of Mycoplasma Fermentas

ABSTRACT

The conformation of two mannose-based amidines, the N-benzylmannoamidine and a pseudo (1→6) dimannoside, has been evaluated using semi-empirical AMI calculations and ¹H NMR studies. The most stable conformations of the mannoamidine ring correspond to the half-chair forms ³H₄ and ⁴H₃. The conformations (Z) or (E) about the exocyclic C-N bond depend on the substituents and it was shown that, in solution, the N-benzylmannoamidine was (E)-configured whilst the pseudo (1→6) dimannoside was (Z)-configured. Using the grid-search approach, the potential energy maps of both mannoamidines were calculated as a function of the torsion angles which define the orientation of the amidine substituent. Three stable conformers were identified for the N-benzylmannoamidine and seven for the pseudo (1→6) dimannoside. Inter-glycosidic NOE have provided evidence for a preferred conformation of the pseudo (1→6) dimannoside in solution. The transition state structure of the α-phenylmannose hydrolysis was optimized using the AMI method and compared to the N-benzylmannoamidine. The developing oxocarbenium ion is well matched by the mannoamidine ring but the orientation of the phenyl group in the inhibitor differs significantly from the position of the leaving group in the transition state. The use of sugar type amidines as haptens to obtain catalytic antibodies is then discussed.

     

Exploiting Aggregation To Achieve Phase Separation in Macrocyclization

The aggregation properties of poly(ethylene glycol) (PEG) can be exploited in organic synthesis to control dilution effects. Through the use of solvent mixtures containing PEG₄₀₀/MeOH, macrocyclization by Glaser–Hay coupling can be conducted at high concentrations. The origin of the selectivity has been studied by using surface tension measurements, UV spectroscopy, and chemical tagging and demonstrates the dependence of the yield and selectivity on the aggregation of PEG₄₀₀ and its ability to preferentially solubilize organic substrates, resulting in a phase separation from the catalyst system.