On the affinity of cytosine towards electrophiles

Ab initio SCF computations on the intrinsic preferences of the H⁺, CH ₃ ⁺ and C₂H ₅ ⁺ cations towards the two principal sites of protonation or alkylation on cytosine, N₃ or O₂, show that this preference undergoes a continuous modification with the increase in size and complexity of the cation. N₃ is the preferred site of fixation of H⁺, O₂ the preferred site of C₂H ₅ ⁺ , while CH ₃ ⁺ has no marked preference. The exchange repulsion term of the binding energy appears responsible for the preference of C₂H ₅ ⁺ for O₂.This work was supported by the Ligue Francaise contre le Cancer and the National Foundation for Cancer Research (USA)     

Monte Carlo versus molecular dynamics simulations in heterogeneous systems: an application to the n-pentane liquid-vapor interface

The Monte Carlo (MC) and molecular dynamics (MD) methodologies are now well established for computing equilibrium properties in homogeneous fluids. This is not yet the case for the direct simulation of two-phase systems, which exhibit nonuniformity of the density distribution across the interface. We have performed direct MC and MD simulations of the liquid-gas interface of n-pentane using a standard force-field model. We obtained density and pressure components profiles along the direction normal to the interface that can be very different, depending on the truncation and long range correction strategies. We discuss the influence on predicted properties of different potential truncation schemes implemented in both MC and MD simulations. We show that the MD and MC profiles can be made in agreement by using a Lennard-Jones potential truncated via a polynomial function that makes the first and second derivatives of the potential continuous at the cutoff distance. In this case however, the predicted thermodynamic properties (phase envelope, surface tension) deviate from experiments, because of the changes made in the potential. A further readjustment of the potential parameters is needed if one wants to use this method. We conclude that a straightforward use of bulk phase force fields in MD simulations may lead to some physical inconsistencies when computing interfacial properties.     

Electrochemistry and photoelectron spectroscopy of oxomolybdenum(V) complexes with phenoxide ligands: effect of para substituents on redox potentials,heterogeneous electron transfer rates,and ionization energies

Complexes of the form (Tp*)MoOCl(p-OC(6)H(4)X) and (Tp*)MoO(p-OC(6)H(4)X)(2) (Tp* = hydrotris(3,5-dimethyl-1-pyrazolyl)borate and X = OEt, OMe, Et, Me, H, F, Cl, Br, I, and CN) were examined by electrochemical techniques and gas-phase photoelectron spectroscopy to probe the effect of the remote substituent (X) on electron-transfer reactions at the oxomolybdenum core. Cyclic voltammetry revealed that all of these neutral Mo(V) compounds undergo a quasireversible one-electron oxidation (Mo(VI)/Mo(V)) and a quasireversible one-electron reduction (Mo(V)/Mo(IV)) at potentials that linearly depend on the electronic influence (Hammett sigma(p) parameter) of X. The first ionization energies for (Tp*)MoO(p-OC(6)H(4)X)(2) (X = OEt, OMe, H, F, and CN) were determined by photoelectron spectroscopy. A nearly linear correlation was found for the Mo(VI)/Mo(V) oxidation potentials in solution and the gas-phase ionization energies. Calculated heterogeneous electron-transfer rate constants show a slight systematic dependence on the substituent.     

Retention of Cr(III) by high-performance chelation ion chromatography interfaced to inductively-coupled plasma mass spectrometric detection with collision cell

High-performance chelation ion chromatography (HPCIC) was employed to retain cationic Cr(III) on an anion-exchange column and hence allow the separation of the two most prevalent forms of chromium, Cr(II) and Cr(VI). A mobile phase of nitric acid was utilized at pH = 1.5; additionally, 2,6-pyridinedicarboxylic acid was used at a concentration of 6 mM. Additives with different structural characteristics were used in an effort to elucidate retention mechanisms. Inductively-coupled plasma mass spectrometry was used for chromium detection. A collision cell was utilized to reduce chloride-based polyatomic ions that may interfere with the detection of Cr(III), and a detection limit study yielded levels in the low part-per-billion range. The newly developed method was applied to the chromatographic analysis of samples of an incubation medium containing Cr(VI) incubated with cell nuclei.     

Atom transfer radical homo‐ and block copolymerization of methyl 1‐bicyclobutanecarboxylate

A non‐olefinic monomer, methyl 1‐bicyclobutanecarboxylate (MBC), was successfully polymerized by the controlled/“living” atom transfer radical polymerization (ATRP) technique, resulting in a well‐defined homopolymer, PMBC, with only cyclobutane ring units in the polymer chain. An AB block copolymer poly(methyl 1‐bicyclobutanecarboxylate)‐b‐polystyrene (PMBC‐b‐PS), having an all‐ring unit segment, was also synthesized with narrow polydispersity and designed number‐average molecular weight in addition to precise end groups. The ¹H NMR spectra, glass‐transition temperature, and thermal stability of PMBC, PMBC‐b‐PS, and PS‐b‐PMBC were investigated. The experimental results showed that the cyclobutane rings in the two block polymers improved their thermal stability. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 1929–1936, 2002     

Synthesis and characterization of active ester-functionalized polypyrrole-silica nanoparticles: application to the covalent attachment of proteins

Novel ester-functionalized polypyrrole-silica nanocomposite particles were prepared by oxidative copolymerization of pyrrole and N-succinimidyl ester pyrrole (50/50% initial concentrations), using FeCl3 in the presence of ultrafine silica nanoparticles (20 nm diameter). The N-succinimidyl ester pyrrole monomer was prepared in aqueous solution using 1-(2-carboxyethylpyrrole) and N-hydroxysuccinimide in the presence of 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide. The resulting nanocomposites (N-succinimidyl ester polypyrrole-silica) are raspberry-shaped agglomerates of silica sol particles "glued" together by the insoluble poly(pyrrole-co-N-succinimidyl pyrrole). The N-succinimidyl ester polypyrrole-silica particles were characterized in terms of their size, density, copolymer content, and polydispersity. Scanning electron microscopy and disk centrifuge sedimentometry confirmed that the nanocomposite particles had narrow size distributions. X-ray photoelectron spectroscopy analysis indicated a silica-rich surface and a high surface concentration of N-succinimidyl ester groups. These nanoparticles exhibited good long-term dispersion stability. The chemical stability of the ester functions in aqueous media after several weeks of storage was monitored by FTIR spectroscopy. The functionalized nanocomposites were tested as bioadsorbents of human serum albumin (HSA). The very high amount of immobilized HSA determined by UV-visible spectroscopy is believed to be due to covalent binding. Incubation of the HSA-grafted nanocomposite with anti-HSA resulted in immediate flocculation, an indication that they are alternative candidates for visual diagnostic assays.     

Syntheses and structural studies on two cycloruthenapentadienyl complexes: [(CO)3RuC4(CH2OH)4]Ru(CO)3·H2O and [(CO)3RuC4(CH2CH2OH)2(C2H5)2]Ru(CO)3

Syntheses and single-crystal X-ray diffraction studies have been completed on two cycloruthenapentadienyl (CO)₆Ru₂L₂ derivatives, with L = CH₂OHC = CCH₂OH and C₂H₅C=CCH₂CH₂OH respectively. Crystal data are as follows: for [(CO)₃RuC₄(CH₂OH)₄]Ru(CO)₃·H₂O, P2₁/c, a 13.72(1), b 9.501(4), c 14.86(1) Å, β 101.10(6)°, R_w = 0.052 for 1911 reflections; for [(CO)₃RuC₄(CH₂CH₂OH)₂(C₂H₅)₂]Ru(CO)₃, P2₁/c, a 9.191(3), b 16.732(4), c 14.903(3) Å, β 113.61(4)°, R_w = 0.042 for 2865 reflections. Both compounds are built up from binuclear units, each unit being regarded as a Ru(CO)₃ fragment π-bonded to a cycloruthenapentadienyl ring. The molecular parameters are compared with those of known cyclometallapentadienyl complexes of transition metals. The presence of a semi-bridging CO group is discussed.     

Indium(III) one-dimensional polymers with pyrazine and pyrazine, 2-carboxylic acid as the spacer molecules

The reactions of indium(III) chloride tetrahydrate with pyrazine (C₄H₄N₂) and pyrazine, 2-carboxylic acid afford two polymeric frameworks, the structures of which were characterized in the solid state by single crystal analysis. The former is a one-dimensional infinite structure interlinked by the pyrazine spacer, while the latter is a one-dimensional ‘zigzag’ polymeric structure. A dimeric indium(III) pyrazine complex is also reported.