Definitive Structural Assessment of Enterococcal Diheteroglycan

Enterococcus faecalis is one of most important nosocomial and often multi‐antibiotic resistant pathogens responsible for infections that are difficult to treat. Previously, a cell‐wall polysaccharide termed diheteroglycan (DHG) was isolated and characterized as a promising vaccine candidate. However, the configuration of its lactic acid (LA) residue attached to the galactofuranoside unit was not assessed, although it influences conformation of DHG chain in terms of biological recognition and immune evasion. This study proves the R configuration of the LA residue by means of chemical analysis, investigation of intramolecular NMR nuclear Overhauser effects and molecular dynamics simulations of native DHG and corresponding R and S models, which were obtained by using pyranoside‐into‐furanoside rearrangement. As alternative treatment and prevention strategies for E. faecalis are desperately needed, this discovery may offer the prospect of a synthetic vaccine to actively immunize patients at risk.     

Prospects of Observing Ionic Coulomb Blockade in Artificial Ion Confinements

Nanofluidics encompasses a wide range of advanced approaches to study charge and mass transport at the nanoscale. Modern technologies allow us to develop and improve artificial nanofluidic platforms that confine ions in a way similar to single-ion channels in living cells. Therefore, nanofluidic platforms show great potential to act as a test field for theoretical models. This review aims to highlight ionic Coulomb blockade (ICB)—an effect that is proposed to be the key player of ion channel selectivity, which is based upon electrostatic exclusion limiting ion transport. Thus, in this perspective, we focus on the most promising approaches that have been reported on the subject. We consider ion confinements of various dimensionalities and highlight the most recent advancements in the field. Furthermore, we concentrate on the most critical obstacles associated with these studies and suggest possible solutions to advance the field further.     

Protein–ligand docking using FFT based sampling: D3R case study

Fast Fourier transform (FFT) based approaches have been successful in application to modeling of relatively rigid protein–protein complexes. Recently, we have been able to adapt the FFT methodology to treatment of flexible protein–peptide interactions. Here, we report our latest attempt to expand the capabilities of the FFT approach to treatment of flexible protein–ligand interactions in application to the D3R PL-2016-1 challenge. Based on the D3R assessment, our FFT approach in conjunction with Monte Carlo minimization off-grid refinement was among the top performing methods in the challenge. The potential advantage of our method is its ability to globally sample the protein–ligand interaction landscape, which will be explored in further applications.     

Interpretation of transport measurements in ZnO-thin films

In order to interpret results of temperature dependent Hall measurements in heteroepitaxial ZnO-thin films, we adopted a multilayer conductivity model considering carrier-transport through the interfacial layer with degenerate electron gas as well as the upper part of ZnO layers with lower conductivity. This model was applied to the temperature dependence of the carrier concentration and mobility measured by Hall effect in a ZnO-layer grown on c-sapphire with conventional high-temperature MgO and low-temperature ZnO buffer. We also compared our results with the results of maximum entropy mobility-spectrum analysis (MEMSA). The formation of the highly conductive interfacial layer was explained by analysis of transmission electron microscopy (TEM) images taken from similar layers.     

Phase Diagrams of Semicrystalline Polymer–Crystalline Substances: Polyolefins–1,2,4,5-Tetrachlorobenzene

The full phase diagrams of low-density polyethylene (LDPE), high-density polyethylene (HDPE), and isotactic polypropylene (i-PP) mixtures with 1,2,4,5-tetrachlorobenzene (TeCB), including the solubility curve of TeCB in a solid polymer, were constructed by an optical method. The diagrams contain a eutectic point that corresponds to the situation when the crystallization of TeCB out of its solution in a polyolefin is accompanied by the crystallization of monomer units of the macromolecules. As a result, the polymer acquires a gel structure with crystallites as crosslinks and amorphous regions saturated with TeCB. It is demonstrated that the eutectic point position on the phase diagram can be used for ranking polymers with respect to their thermodynamic affinity to a solvent. For the studied systems, the affinity to TeCB was decreased in the order i-PP, HDPE, and LDPE. Direct experimental evidence was obtained that TeCB crystals can be dissolved in a solid polymer via a vapor phase mechanism, which leads to the polymer amorphization.     

Stereoselective preparation of mono- and bis-derivatives of pentacyclo[6.3.0.02,6.03,10.05,9] undecane (D 3-trishomocubane)

The rearrangement of easily accessible Cookson’s diketone with chlorosulfonic acid in chloroform followed by the acidic hydrolysis gave 6-chloro-7-hydroxy-dichloropentacyclo[6.3.0.0^2,6.0^3,10.0^5,9]undecane-4-one, whose syn-stereochemistry was assigned through the X-ray crystal structure analysis. This key structure was used for the stereoselective synthesis of the D ₃-trishomocubane derivatives as well as for the preparation of potential drugs bearing hydroxy- and amino-functional groups. A new multigram preparative synthesis of D ₃-trishomocubane was developed.      

Sorption of benzene vapors to flexible metal–organic framework [Zn2(bdc)2(dabco)]

The isotherms of benzene sorption by the metal–organic coordination polymer [Zn₂(bdc)₂(dabco)] were studied within the temperature range 25–90 °C at pressures up to 75 torr. The maximal benzene content in [Zn₂(bdc)₂(dabco)] at room temperature was demonstrated to correspond to the composition [Zn₂(bdc)₂(dabco)]·3.8C₆H₆. It was established that the process of benzene desorption from the substance under investigation occurs in three stages. (1) Evaporation of benzene from the phase of variable composition (phase C) with compression and distortion of the unit cell (the composition of the phase C varies from [Zn₂(bdc)₂(dabco)]·3.8C₆H₆ to [Zn₂(bdc)₂(dabco)]·3.2C₆H₆). (2) The transformation of the phase C into phase P. The phase P has the same unit cell geometry as that for the empty framework. The maximal benzene content is [Zn₂(bdc)₂(dabco)]·1.0C₆H₆. (3) Benzene evaporation from the phase P of variable composition. We studied the temperature dependences of the equilibrium vapor pressure of benzene for the samples with compositions [Zn₂(bdc)₂(dabco)]·3.0(3)C₆H₆ and [Zn₂(bdc)₂(dabco)]·2.0(3)C₆H₆ within the temperature range 290–370 K. The thermodynamic parameters of benzene vaporization were determined for the latter compound ( $ \Updelta {\text{H}}_{{{\text{av}} .}}^{o} = 49\left( 1 \right) \,{\text{kJ }}\left( {{\text{moleC}}_{6} {\text{H}}_{6} } \right)^{ - 1} $ ; $ \Updelta {\text{S}}_{{{\text{av}} .}}^{^\circ } = 100\left( 3 \right)\, {\text{J}}\left( {{\text{moleC}}_{6} {\text{H}}_{6} {\text{K}}} \right)^{ - 1} $ ; $ \Updelta {\text{G}}_{298}^{^\circ } = 19.0\left( 2 \right)\, {\text{kJ}}\left( {{\text{moleC}}_{6} {\text{H}}_{6} } \right)^{ - 1} $ ).