Chemical analysis and cellular imaging with quantum dots

Quantum dots are tiny light-emitting particles on the nanometer scale. They are emerging as a new class of biological labels with properties and applications that are not available with traditional organic dyes and fluorescent proteins. Their novel properties such as improved brightness, resistance against photobleaching, and multicolor light emission, have opened new possibilities for ultrasensitive chemical analysis and cellular imaging. In this Research Highlight article , we discuss the unique optical properties of semiconductor quantum dots, surface chemistry and bioconjugation, current applications in bioanalytical chemistry and cell biology, and future research directions.     

Two-component dendritic gel: effect of stereochemistry on the supramolecular chiral assembly

The self-assembly of diaminododecane solubilised by four different stereoisomeric dendritic peptides to form gel-phase materials in toluene was investigated. The second generation dendritic peptides were based on D- and L-lysine building blocks, and each contained three chiral centres. By designing dendritic peptides in which the configurations of the chiral centres were modified, and applying them as gelator units, the assembly of stereoisomers could be investigated. In all cases, the self-assembly of gelator units resulted in macroscopic gelation. However, the degree of structuring was modulated by the stereoisomers employed, an effect which changed the morphology and macroscopic behavior of the self-assembled state. Enantiomeric (L,L,L or D,D,D) gelator units formed fibrous molecular assemblies, whilst the racemic gel (50 % L,L,L : 50 % D,D,D) formed a flat structure with a "woven" appearance. Gelator units based on L,D,D or D,L,L dendritic peptides also formed fibrous assemblies, but small-angle X-ray scattering indicated significant morphological differences were caused by the switch in chirality. Furthermore, the macroscopic stability of the gel was diminished when these peptides were compared with their L,L,L or D,D,D analogues. In this paper it is clearly shown that individual stereocentres, on the molecular level, are directly related to the helicity within the fibre. It is argued that the chirality controls the pattern of hydrogen bonding within the assembly, and hence determines the extent of fibre formation and the macroscopic gel strength.     

Asymmetric synthesis of (1R,2S,3R)-gamma-methyl-cis-pentacin by a kinetic resolution protocol

The asymmetric synthesis of (1R,2S,3R)-3-methyl-2-amino-cyclopentane carboxylic acid has been achieved via kinetic resolution of racemic tert-butyl 3-methyl-cyclopentene-1-carboxylate with homochiral lithium (S)-N-benzyl-N-alpha-methylbenzylamide.     

Novel fragmentation reaction of correolide

[reaction: see text] Pentacyclic triterpenoid natural product correolide (1) was converted to ketone 2 via ozonolysis. An unusual fragmentation reaction of ketone 2 with LiCl was discovered. This reaction is general among several similar substrates examined and appears to be specific for the correolide-type E-ring structure (ketone). A mechanism involving a retroaldol reaction, a nucleophilic opening of the epoxide, and a subsequent acetoxy elimination reaction was proposed.     

Synthesis of di-t-alkylamines

Di-$\text{t}$-alkylamines can be synthesized efficiently by a three-step process: (1) oxidation of a $\text{t}$-alkylamine to a $\text{t}$-alkylnitroso compound with peracetic acid in ethyl acetate (2) conversion of the $\text{t}$-alkylnitroso compound to a tri-$\text{t}$-alkylhydroxylamine by successive trapping of two $\text{t}$-butyl radicals and (3) sodium naphthalide reduction to the di-$\text{t}$-alkylamine.     

Ab initio study of the cyclooctatetraenyl radical

Ab initio calculations have been carried out on the 1,3,5,7- and 1,2,4,7-tetraene configurations of the cyclooctatetraenyl radical at UHF, ROHF, MCSCF, ROCISD, QCISD, and CCSD(T) levels of theory with 6-311G(d,p) and cc-pVDZ basis sets. Although spin contamination is present, the ROCISD calculations support the energies obtained from less intensive, UHF-based coupled cluster calculations over the energies obtained from MCSCF analysis of the pi-electron orbitals. The 1,3,5,7-form is a local minimum at the coupled cluster levels, higher in energy than the resonance-stabilized 1,2,4,7-form by 10-13 kJ/mol, but bounded by a barrier of less than 0.5 kJ/mol. The isomerization surface connecting these two structures is described and results reported from integration of the vibrational Schr?dinger equation on that surface. Excited vibrational states at energies just above the isomerization barrier are dominated by the character of the 1,3,5,7-tetraenyl radical, which suggests that chemistry involving this intermediate at typical combustion temperatures may branch at this juncture.     

Infrared and computational investigation of vanadium-substituted Keggin [PVnW12-nO40](n+3)- polyoxometallic anions

This study investigates complex salts of [PW(12)O(40)](3-), [PVW(11)O(40)](4-), [PV(2)W(10)O(40)](5-), and [PV(3)W(9)O(40)](6-) Keggin anions using Fourier transform infrared spectroscopy under ambient atmospheric and high-vacuum conditions and by computational methods. A detailed vibrational study suggests that the presence and amount of vanadium in these anions can be tested quickly and reliably with the help of infrared spectroscopy because the salts of these anions exhibit distinctly different infrared absorption signatures (particularly in the 1025-1250 cm(-1) region, where the P-O stretch is surrounded by a set of complex vibrations involving V-O and W-O bonds). Investigation of these salts with different countercations suggests that the overall appearance of the spectra, and thus the ability to use infrared as a diagnostic tool to identify the presence and number of vanadium atoms in Keggin structure anions, is not affected significantly. Last, it is shown that all the structures investigated are extremely stable across a wide range of temperatures.     

Isolation and Crystal Structure of Novel by-products Observed During the Formation of bis(thiosemicarbazones)

During the condensation of 4-methyl-4-phenyl-3-thiosemicarbazide (3) with 2,3-butanedione an unexpected by-product, 8a-methyl-6,8a-dihydro-8-methyl-2-[N-methyl-N-phenylamino]-5H-1,3,4-thiadiazolo[3,2-d][1,2,4]triazine-5-thione, (5) was obtained in addition to the desired bis(thiosemicarbazone) (4). An X-ray crystal structure was obtained and is presented together with a proposed mechanism for its formation. A brief investigation of the coordination chemistry of bicycle (5) was carried out. The formation of cyclic compounds during the synthesis of analogues with extended backbones is also described.     

An alternative synthesis of benzobis(imidazolium) salts via a ‘one-pot’ cyclization/oxidation reaction sequence

Cyclization of N-aryl and N-alkyl 2,5-diamino-1,4-benzoquinonediimines using paraformaldehyde under acidic conditions followed by oxidation with catalytic amounts of Pd(OAc)₂ afforded their respective benzobis(imidazolium) salts in yields of 48-98%. A comparative solid-state study between a 2,5-diamino-1,4-benzoquinonediimine and its corresponding benzobis(imidazolium) dichloride was also performed.     

Synthesis of a short-chain fullerene dimer

The synthesis of a short-chain fullerene dimer via bifunctional cycloaddition is demonstrated. A mono-functionalised C₆₀ species is isolated, and has the potential for further organic functionalisation.