Utilization of metabolomics to identify serum biomarkers for hepatocellular carcinoma in patients with liver cirrhosis

Characterizing the metabolic changes pertaining to hepatocellular carcinoma (HCC) in patients with liver cirrhosis is believed to contribute towards early detection, treatment, and understanding of the molecular mechanisms of HCC. In this study, we compare metabolite levels in sera of 78 HCC cases with 184 cirrhotic controls by using ultra performance liquid chromatography coupled with a hybrid quadrupole time-of-flight mass spectrometry (UPLC–QTOF MS). Following data preprocessing, the most relevant ions in distinguishing HCC cases from patients with cirrhosis are selected by parametric and non-parametric statistical methods. Putative metabolite identifications for these ions are obtained through mass-based database search. Verification of the identities of selected metabolites is conducted by comparing their MS/MS fragmentation patterns and retention time with those from authentic compounds. Quantitation of these metabolites is performed in a subset of the serum samples (10 HCC and 10 cirrhosis) using isotope dilution by selected reaction monitoring (SRM) on triple quadrupole linear ion trap (QqQLIT) and triple quadrupole (QqQ) mass spectrometers. The results of this analysis confirm that metabolites involved in sphingolipid metabolism and phospholipid catabolism such as sphingosine-1-phosphate (S-1-P) and lysophosphatidylcholine (lysoPC 17:0) are up-regulated in sera of HCC vs. those with liver cirrhosis. Down-regulated metabolites include those involved in bile acid biosynthesis (specifically cholesterol metabolism) such as glycochenodeoxycholic acid 3-sulfate (3-sulfo-GCDCA), glycocholic acid (GCA), glycodeoxycholic acid (GDCA), taurocholic acid (TCA), and taurochenodeoxycholate (TCDCA). These results provide useful insights into HCC biomarker discovery utilizing metabolomics as an efficient and cost-effective platform. Our work shows that metabolomic profiling is a promising tool to identify candidate metabolic biomarkers for early detection of HCC cases in high risk population of cirrhotic patients.     

Photophysics of two structurally similar dyes containing substituted amino as donor and carbonyl as acceptor groups

The present work entails a comparative photophysical study of two structurally similar donor–acceptor dyes. In one of the dyes (DN2) twisting about C–N bond is permissible, while twisting is strategically restricted in the other (N2). Optical responses of both the dyes have been monitored in pure and mixed binary solvents comprising of mainly aprotic+protic systems. Results indicate that the nature of emitting states in protic and aprotic microenvironments is different for the two dyes. In aprotic media the solvated dye molecule is the emitting species while emission mainly takes place, supposedly, from the dye-solvent hydrogen bonded complex in protic media. The parallel behaviour of the two dyes indicates that twisting about C–N bond in the excited state is not an important photophysical process. Further, the effect of addition of strong acid to the dye solution and the corresponding existence of equilibrium between two tautomeric forms for both the dye has been studied.     

Exact Solutions for Jaynes-Cummings Models with Non-degenerate Two-Photon Transitions in the Ladder Configuration

In the present paper, the eigenfunctions and eigenvalues of the Hamiltonian of the interacting system have been obtained in two generalized Jaynes Cummings models separately, one in which the transition are mediated by two different modes of photon in the ladder configuration and the other involving two mode multi-photon interaction between the field and the atom. Effect of intensity dependent coupling between the field and the atom in both the above-mentioned cases have been investigated. Graphical features of the time dependence of population inversion have been analyzed when one of the field modes is prepared initially in a coherent state while the other one in a vacuum state.     

Role of conformational isomerism in solvent-mediated charge transfer in chiral (S) 1,2,3,4-tetrahydro-3-isoquinoline methanol (THIQM): condensed-phase to jet-cooled spectroscopic studies

Intramolecular charge-transfer reaction in chiral (S) 1,2,3,4-tetrahydro-3-isoquinoline methanol (THIQM) has been investigated in the condensed phase and in jet-cooled conditions by means of laser-induced fluorescence, dispersed emission, resonance-enhanced two-photon ionization, and IR-UV double resonance experiments, as well as quantum chemical calculations. In the condensed phase, THIQM only shows local emission in nonpolar and protic solvents and dual emission in aprotic polar solvents, where the solvent-polarity dependent Stokes shifted emission is ascribed to a state involving charge transfer from the nitrogen lone pair to the benzene π-cloud. Ab initio calculations reveal two low-energy conformers, which are observed in jet-cooled conditions. In the most stable conformer, THIQM(I), the CH(2)OH substituent acts as a hydrogen bond donor to the nitrogen lone pair in the equatorial position, while the second most stable conformer, THIQM(II), corresponds to the opposite NH···O hydrogen bond, with the nitrogen lone pair in the axial position. The two low-energy jet-cooled conformers of THIQM evidenced from the laser-induced fluorescence and dispersed emission spectra only show structured local emission. Complexes with usual solvents reproduce the condensed phase properties. The jet-cooled complex with aprotic polar solvent acetonitrile shows both local emission and charge transfer emission as observed in solution. The jet-cooled hydrate mainly shows local emission due to the unavailability of the nitrogen lone pair through intermolecular hydrogen bonding.     

Recognition of Hg(2+) using diametrically disubstituted cyclam unit

A newly synthesized 1,4,8,11-tetraazacyclotetradecane derivative (L), functionalized with a diazo moiety as the reporter functionality, is found to bind specifically to Hg(2+) with an associated change in color that could be visually detected. With biologically benign β-CD, it forms an inclusion complex (L·2β-CD), which shows a much higher solubility in water, and this helps in developing a more intense color on binding to Hg(2+) in a CH(3)CN-HEPES buffer medium. The nontoxic nature of L was checked with the living cells of a Gram negative bacterium, Pseudomonas putida . Further, experiments revealed that these two reagents could be used as staining agents for the detection of Hg(2+) present in this microorganism.     

Water-induced physical gelation of organic solvents by N-(n-alkylcarbamoyl)-L-alanine amphiphiles

A series of amino acid-based gelators N-(n-alkylcarbamoyl)-L-alanine were synthesized, and their gelation abilities in a series of organic solvents were tested. No gelation was observed in pure solvents employed. All the amphiphilic molecules were found to form stable organogels in the solvents in the presence of a small amount of water, methanol, or urea. The volume of solvent gelled by a given amount of the gelator was observed to depend upon the volume of added water. The gelation behavior of the amphiphiles in a given solvent containing a known volume of water was compared. The effects of chirality and substitution on the acid group on the gelation ability were examined. Although the corresponding N-(n-tetradecylcarbamoyl)-DL-alanine was found to form only weak organogel in pure solvents, the achiral amphiphilic compound N-(n-tetradecylcarbamoyl)-β-alanine, however, did not form gel in the absence of water. The methyl ester of N-(n-tetradecylcarbamoyl)-L-alanine was also observed to form gels in the same solvents, but only in the presence of water. The organogels were characterized by several techniques, including (1)H NMR, Fourier transform IR, X-ray diffraction, and field emission scanning electron microscopy. The thermal and rheological properties of the organogels were studied. The mechanical strength of the organogel formed by N-(n-tetradecylcarbamoyl)-DL-alanine was observed to increase upon the addition of water. It was concluded that water-mediated intermolecular hydrogen-bonding interaction between amphiphiles caused formation of supramolecular self-assemblies.     

Zn(II)-cyclam based chromogenic sensors for recognition of ATP in aqueous solution under physiological conditions and their application as viable staining agents for microorganism

Two chromogenic complexes, L.Zn (where L is (E)-4-((4-(1,4,8,11-tetraazacyclotetradecan-1-ylsulfonyl)phenyl)diazenyl)-N,N-dimethylaniline) and its [2]pseudorotaxane form (α-CD.L.Zn), were found to bind preferentially to adenosine triphosphate (ATP), among all other common anions and biologically important phosphate (AMP, ADP, pyrophosphate, and phosphate) ions in aqueous HEPES buffer medium of pH 7.2. Studies with live cell cultures of prokaryotic microbes revealed that binding of these two reagents to intercellular ATP, produced in situ, could be used in delineating the gram-positive and the gram-negative bacteria. More importantly, these dyes were found to be nontoxic to living microbes (eukaryotes and prokaryotes) and could be used for studying the cell growth dynamics. Binding to these two viable staining agents to intercellular ATP was also confirmed by spectroscopic studies on cell growth in the presence of different respiratory inhibitors that influence the intercellular ATP generation.     

Converting eucalyptus leaves into mesoporous carbon for its application in quasi solid-state supercapacitors

A high performance activated carbon having pore diameter of 2.8 nm and specific surface area of 841.8 m² g^?1 is prepared by chemical activation of eucalyptus leaves using KOH as an activating agent. The chemically-treated eucalyptus leaves EL(T) as electrode material has a specific capacitance of 663.5 mF cm^?2 (equivalent to single electrode specific capacitance of 442.3 F g^?1) with solid polymer electrolyte. This active material has excellent rate capability and good cycle performance, over 95 % of the original capacitance is retained after 5,000 cycles. The energy density of 101.6 Wh kg^?1 and power density of 2.85 kW kg^?1 has been observed for EL(T) based quasi solid-state supercapacitors.     

Energy Relay from an Unconventional Yellow Dye to CdS/CdSe Quantum Dots for Enhanced Solar Cell Performance

A new design for a quasi‐solid‐state Forster resonance energy transfer (FRET) enabled solar cell with unattached Lucifer yellow (LY) dye molecules as donors and CdS/CdSe quantum dots (QDs) tethered to titania (TiO₂) as acceptors is presented. The Forster radius is experimentally determined to be 5.29 nm. Sequential energy transfer from the LY dye to the QDs and electron transfer from the QDs to TiO₂ is followed by fluorescence quenching and electron lifetime studies. Cells with a donor–acceptor architecture (TiO₂/CdS/CdSe/ZnS‐LY/S^2?‐multi‐walled carbon nanotubes) show a maximum incident photon‐to‐current conversion efficiency of 53 % at 530 nm. This is the highest efficiency among Ru‐dye free FRET‐enabled quantum dot solar cells (QDSCs), and is much higher than the donor or acceptor‐only cells. The FRET‐enhanced solar cell performance over the majority of the visible spectrum paves the way to harnessing the untapped potential of the LY dye as an energy relay fluorophore for the entire gamut of dye sensitized, organic, or hybrid solar cells.