Determination of energies and electronic densities of functional groups according to partitionings in the physical space

This work formulates our previously reported partitionings of the first-order reduced density matrix and the molecular electronic energy using for both quantities an identical mathematical framework. The procedure provides a consistent and rigorous scheme for extending our algorithms to unions of atomic domains, in order to describe molecular fragments which can be identified as functional groups. Numerical determinations, performed in several series of organic compounds and clusters, support the reliability of our methodology to describe properties of atomic groups.     

Effects of high pressure on the luminescence spectra of Eu(SO4)2.NH4 microcrystals: anisotropically induced structural distortions

The possibilities of the use of Eu3+ in extracting information of the pressure effects on the nature of its crystal site in the NH4.Eu(SO4)2 catalytic host are closely inspected through the study of emission spectra for applied pressures up to 87 kbar. The phenomenological crystal field analysis of these spectra reveals clear discontinuities, at approximately 30 kbar, the sharper ones, and then at approximately 70 kbar, in crystal field strength trends, which taken together with structure-based simulations of crystal field interactions indicate well-defined pressure-induced anisotropic distortions in Eu3+ local environments.     

Inhibition of histone deacetylase 3 protects beta cells from cytokine-induced apoptosis

Cytokine-induced beta-cell apoptosis is important to the etiology of type-1 diabetes. Although previous reports have shown that general inhibitors of histone deacetylase (HDAC) activity, such as suberoylanilide hydroxamic acid and trichostatin A, can partially prevent beta-cell death, they do not fully restore beta-cell function. To understand HDAC isoform selectivity in beta cells, we measured the cellular effects of 11 structurally diverse HDAC inhibitors on cytokine-induced apoptosis in the rat INS-1E cell line. All 11 compounds restored ATP levels and reduced nitrite secretion. However, caspase-3 activity was reduced only by MS-275 and CI-994, both of which target HDAC1, 2, and 3. Importantly, both MS-275 and genetic knockdown of Hdac3 alone were sufficient to restore glucose-stimulated insulin secretion in the presence of cytokines. These results suggest that HDAC3-selective inhibitors may be effective in preventing cytokine-induced beta-cell apoptosis.     

Nanosensors in environmental analysis

Nanoscience and nanotechnology deal with the study and application of structures of matter of at least one dimension of the order of less than 100 nm (1 nm = one millionth of a millimetre). However, properties related to low dimensions are more important than size. Nanotechnology is based on the fact that some very small structures usually have new properties and behaviour that are not displayed by the bulk matter with the same composition.This overview introduces and discusses the main concepts behind the development of nanosensors and the most relevant applications in the field of environmental analysis. We focus on the effects (many of which are related to the quantum nature) that distinguish nanosensors and give them their particular behaviour. We will review the main types of nanosensors developed to date and highlight the relationship between the property monitored and the type of nanomaterial used.We discuss several nanostructures that are currently used in the development of nanosensors: nanoparticles, nanotubes, nanorods, embedded nanostructures, porous silicon, and self-assembled materials. In each section, we first describe the type of nanomaterial used and explain the properties related to the nanostructure. We then briefly describe the experimental set up and discuss the main advantages and quality parameters of nanosensing devices. Finally, we describe the applications, many of which are in the environmental field.     

Optimization of capillary electrophoretic enantioseparation for basic drugs with native beta-CD as a chiral selector

This study presents the advantages of the 20 microm inner diameter (id) capillary for the enantioseparation of ten basic drugs with native beta-CD as the chiral selector. The apparent binding constants of each enantiomeric pair were determined to calculate the optimum beta-CD concentration ([beta-CD]opt) and the optimization was subsequently carried out. Comparison of the 20 microm id with 50 microm id were made in terms of the results obtained in the optimization and detection limits. Applying the optimum conditions for each compound, reproducible results (RSD from 0-3; n>5) were obtained for the 20 microm id capillary. Although the sensitivity is lower in the 20 microm id capillary, the LOD determined using this capillary is still found to be acceptable for the ten basic drugs studied. Enhanced resolution and faster analysis times were the main advantages observed with the use of this capillary in enantioseparation.     

Fibrinogen adsorption on three silica-based surfaces: conformation and kinetics

Using AFM (atomic force microscopy) to probe protein conformation and arrangement, and TIRF (total internal reflectance fluorescence) to monitor kinetics, fibrinogen adsorption on three different silica-based surfaces was studied: the native oxide on silicon, acid-etched microscope slides, and acid-etched polished glass. The three are chemically similar, but the microscope slide is rougher and induces AFM tip instabilities that appear as high spots on the bare surface. Fibrinogen's conformation and transport-limited adsorption kinetics are found to be quantitatively similar on all three surfaces. Further, the number of adsorbed proteins in progressive AFM micrographs quantitatively match the coverages measured by TIRF during early adsorption. Surfaces appear full, via AFM, when adsorbed amounts are about an order of magnitude below their true saturation levels (via TIRF) because, above about 0.26 mg/m(2), individual proteins cannot be discerned. The results demonstrate how the appearance of AFM micrographs can be misleading regarding surface saturation. On all three surfaces, fibrinogen is, at most, slightly aggregated, showing limited, if any, surface mobility. The complexities of the microscope slide's surface landscape minimally impact adsorption.     

Decomposition of the first-order reduced density matrix: an isopycnic localization treatment

In this work, we propose a partitioning of the first-order reduced density matrix corresponding to an N-electron system into first-order reduced density matrices associated with regions defined in the real space (regional matrices). The treatment is based on an isopycnic orbital localization transformation that provides regional matrices that are diagonalized by identical localized orbitals, having many attributes associated with chemical concepts (appropriate localization in space, high transferability, etc.). Although the obtained numerical values are similar to those arising from previous studies, their interpretation is more rigorous and the computational cost is much lower.     

Approaches to the quaternary stereocentre and to the heterocyclic core in diazonamide A using the Heck reaction and related coupling reactions

In model studies towards the quaternary centre at the heart of diazonamide A (early structure 2; revised structure 1), cyclisations of the alkene-substituted iodoaryls 4, 13, 18 and 23, under Heck reaction conditions, were shown to lead to the corresponding benzodihydrofuran 5, benzofuranone 14 and the oxindoles 19 and 24 respectively, in 50-80% yield. Further manipulation of the benzodihydrofuran 5 then led to the intermediates 30, 33 and 39, which make up parts of the oxazole-indole heterocyclic core in diazonamide A. Attempts to perform a corresponding 13-exo-trig Heck cyclisation from the precursor 46a, prepared from 44 and 45, leading to 47 were not successful. A similar outcome was obtained during attempts to effect Heck cyclisations from the ester 57 and the related ether 59. Treatment of the chromene-substituted iodoaryl 62 with Pd(OAc)2, PPh3 and Ag2CO3 led to the spirocycle 64 as a crystalline solid. X-Ray crystal structure analysis established that the quaternary centre in 64 had the same configuration as that present in diazonamide A (1).     

Dynamic and static quenching of fluorescence by 1-4 nm diameter gold monolayer-protected clusters

How the efficiency of molecular quenching by Au nanoparticles depends on nanoparticle size is reported for (a) dynamic (collisional) quenching of four different fluorophores by three Au nanoparticles having similar protective layers but differing core diameters (1.1, 1.6, and 2.0 nm) and (b) static quenching in the electrostatic association between [Ru(bpy)3]2+ and five tiopronin-protected Au nanoparticles having core diameters from 1.3 to 3.9 nm. The quenching constants systematically increase with core size. In (a), the dynamic constants scale with the molar absorbance coefficients of the nanoparticles, showing the essentially of the absorbance/emission spectral overlap, and the associated nanoparticle core density of electronic states, in energy-transfer quenching. In (b), the fluorescence of the Au nanoparticle itself was enhanced by energy transfer from the [Ru(bpy)3]2+ fluorophore.