Strain-dependence of the electronic properties in periodic quadruple helical G4-wires

The electronic structure of periodic quadruple helix guanine wires, which mimic G4-DNA molecules, was studied as a function of the stacking distance between consecutive planes, by means of first principles density functional theory calculations. We show that, whereas for the native DNA interplane separation of 3.4 A the HOMO- and LUMO-derived bands are poorly dispersive, the bandwidths can be significantly increased when compressive strain is applied along the helical axis. Our findings indicate that efficient band conduction for both holes and electrons can be supported by such wires for stacking distances below 2.6 A, which imply a huge axial deformation with respect to double and quadruple helices in solutions and in crystals.     

Micellization of economically viable surfactants in CO(2)

Stability and aggregation structures of various economically viable surfactants for CO(2) are reported. The compounds are either commercially available octylphenol nonionics (Triton X-100, X-100 reduced, and X-45) or custom-made analogues of aerosol-OT (J. Am. Chem. Soc. 123 (2001) 988). These were selected to reveal the influence of chain terminal group structure, namely highly methylated t-butyl units, on solubility and aggregation in CO(2). In addition the mean ethylene oxide block length is varied for the Triton surfactants (X-100 approximately EO(10), X-45 approximately EO(8)). High-pressure small-angle neutron scattering (SANS) experiments revealed the presence of aggregates, consistent with spheroidal reverse micelles. The nonionics show a temperature and pressure dependence on solubility. These results confirm the special affinity of highly methyl-branched tails for CO(2). However, none of these systems were able to disperse significant amounts of water or brine; therefore hydrated reversed micelles or microemulsion droplets were not stabilized. Hence the utility of these cheap methyl-branched surfactants in CO(2) is limited, and so groups of greater CO(2)-philicity are needed to achieve the goal of water-hydrocarbon surfactant-CO(2) dispersions.     

An improved procedure for the Beckmann rearrangement of cyclobutanones

γ-Lactams are important building blocks for the synthesis of biologically active molecules and can easily be accessed via Beckmann rearrangement of cyclobutanones. However, Beckmann fragmentation is often a competing reaction for these strained ketones. We found that performing the Beckmann rearrangement with Tamura’s reagent in the presence of aqueous HCl suppresses the undesired fragmentation reaction. This improved procedure was applied to a broad scope of substrates affording monocyclic, bicyclic, tricyclic or spirocyclic lactams.Our experimental results and DFT calculations suggest that the mechanism of the rearrangement probably involves a tetrahedral intermediate and doesn’t proceed via oxime fragmentation as in a classical Beckmann rearrangement.     

New Prospects toward the Synthesis of Difluoromethylated Phosphate Mimics

The difluoromethyl phosphonate motif plays a crucial role in the development of bioactive molecules as it is considered as a phosphate bioisoster. Since 2010, a renewal of interest to enlarge the panel of reactions to access these difluoromethylated phosphonate‐containing molecules has been witnessed. This Concept article charts the recent progress that has been made.     

Online coupling of high-resolution chromatography with extreme UV photon activation tandem mass spectrometry: Application to the structural investigation of complex glycans by dissociative photoionization

The activation of ions by extreme-energy photons (XUV) produced by a synchrotron radiation beamline is a powerful method for characterizing complex glycans using tandem mass spectrometry (MS). As previously described, this activation method leads to rich fragmentation spectra with many structurally valuable cross-ring cleavages while maintaining labile modifications on the glycan structures. However, until now, the tandem MS event was too long to be compatible with liquid chromatography elution times. In this work, the duty cycle of the activation and detection of fragments was shortened, and the background signal on the spectra was drastically reduced. Both improvements allowed, for the first time, the successful coupling of a UHPLC system to XUV-activated tandem MS. The approach was used to characterize a complex mixture of oligo-porphyrans, which are a class of highly sulfated oligosaccharides, in a fully automated way. Due to an enhanced dynamic range and an increased sensitivity, some hypothetical structures of low abundance have been unequivocally confirmed in this study and others have been revised. Some previously undescribed species of oligo-porphyrans that exhibit lateral branching have been fully resolved. This work contributes to the scarce knowledge of the structure of porphyrans in red algae and pushes the current capacities of XUV-activation tandem MS by demonstrating the possibility of a direct coupling with UHPLC. This study will considerably broaden the applicability and practicality of this method in many fields of analytical biology.     

Thermogravimetric characteristics of barbituric acid and some of its derivatives

The thermolysis curves of barbituric acid and some of its derivatives have been determined. Barbituric acid, violuric acid and dilituric acid form hydrates while 1,3-dimethylvioluric acid and barbital are anhydrous. Barbital and 1,3-dimethylvioluric acid sublime before decomposition. The differential thermal analysis for dilituric acid showed a sharp exotherm at 190° indicating a violent explosion.     

Nonmacrocyclic luminescent lanthanide complexes stable in biological media

The synthesis of ligand L(P)H(8), based on a 2,6-bispyrazolyl-pyridine scaffold functionalized by iminobismethylenephosphonate functions, is described and its pK values were determined by a combination of pH-spectrophotometric titrations and potentiometry. The interaction of L(P) with Tb(3+) was investigated in water (0.01 M TRIS/HCl pH = 7.0) by means of UV-vis and fluorescence titration experiments and evidenced the formation of at least three species with 1:1; 1:2, and 2:1 M-L ratios, the 1:1 complex appearing as particularly stable under these conditions (log K(cond) > 8). Na(4)[LnL(P)H] complexes (Ln = Eu and Tb) were prepared and characterized by elemental analysis, IR spectroscopy, and electrospray mass spectrometry. Their photophysical properties were investigated in aqueous solutions, revealing an excellent shielding of the Ln cations from the solvent environment (no water molecules in the first coordination sphere), very long luminescence lifetimes (τ(H(2)(O)) = 1.50 and 3.28 ms, respectively, for Eu and Tb) and reasonable luminescent quantum yields (?(H(2)(O)) = 2.4 and 37%, respectively, for Eu and Tb). Using fetal bovine serum as a model for biological media showed the Tb complex to remain luminescent in these conditions. The structure of the europium complex was studied by means of density functional theory (DFT) modeling, confirming the wrapping of the ligand around the cation, and the very good shielding of the coordinated Ln cation. The conditional stability constant for the formation of the Tb complex with L(P) was determined by competition experiments with EDTA and monitored by fluorescence spectroscopy (log K(TbL(P)cond) = 14.1 ± 0.3, 0.01 M TRIS/HCl, pH = 7.4) and was used to determine the thermodynamic constant (log K(TbL(P)) = 20.4 ± 0.4). A systematic comparison with ligand L(C), in which phosphonate functions are replaced by carboxylate ones, is made throughout the study, highlighting the large interest of the introduction of phosphonate moieties to obtain biologically stable luminescent lanthanide complexes.