Efficient synthesis of an enantiopure beta-lactam as an advanced precursor of thrombin and tryptase inhibitors

A new and efficient synthesis of a beta-lactam that is an advanced precursor of inhibitors of thrombin and tryptase is reported. The reaction sequence is based on the use of an inexpensive enantiomerically pure starting material and is designed to allow access to both enantiomers of the target molecules by epimerization of a side-product obtained along the synthesis. An improved procedure for the epimerization step that takes advantage of the use of a polymer-supported and recyclable phase-transfer catalyst is described.     

Effect of packing and tilt on the rotational barriers of an amino, nitro-substituted phenylene ethynylene trimer

Rotational potentials are computed for heptamers and nonamers of an amino, nitro-substituted phenylene ethynylene trimer molecule. A herringbone and a parallel-slipped packing arrangement are considered. The effect of tilting the molecules with respect to the surface as well as the effect of the gold support are also taken into account. The herringbone structure with the molecules perpendicular to the surface has a low rotational barrier (2 kcal/mol). Tilting the molecules by 30 degrees increases the rotational barriers significantly (16 kcal/mol). The parallel-slipped structure has rotational barriers of 7 kcal/mol. Including the effect of the gold support increases the rotational barriers for tilted molecules but has little effect on perpendicular molecules.     

Human health-related properties of chromones: an overview

Abstract

Natural compounds occurring throughout the world are scientifically and practically valuable because of their unique and beneficial properties to control a wide range of disorders in the human body. Chromones are attracting increasing attention as novel therapeutic agents due to their effective bioactivities for human health. Accordingly, the present overview article was designed to scan the biological and pharmacological performance of chromones, including their anti-inflammatory, anticancer, anti-oxidant, and anti-microbial activities.     

Water at a hydrophilic solid surface probed by ab initio molecular dynamics: inhomogeneous thin layers of dense fluid

We present a microscopic model of the interface between liquid water and a hydrophilic, solid surface, as obtained from ab initio molecular dynamics simulations. In particular, we focused on the (100) surface of cubic SiC, a leading semiconductor candidate for biocompatible devices. Our results show that in the liquid in contact with the clean substrate, molecular dissociation occurs in a manner unexpectedly similar to that observed in the gas phase. After full hydroxylation takes place, the formation of a thin (approximately 3 A) interfacial layer is observed, which has higher density than bulk water and forms stable hydrogen bonds with the substrate. The presence of this thin layer points at rather weak effects on the structural properties of water induced by a one-dimensional confinement between approximately 1.3 nm hydrophilic substrates. In addition, our results show that the liquid does not uniformly wet the surface, but molecules preferably bind along directions parallel to the Si dimer rows.     

Feasibility of employing permanent chemical modifiers for the determination of cadmium in coal using slurry sampling electrothermal atomic absorption spectrometry

Iridium and ruthenium, alone and in combination with tungsten, thermally deposited on the platform of a transversely heated graphite tube, were investigated for their suitability as permanent chemical modifiers for the determination of cadmium in coal slurries by electrothermal atomic absorption spectrometry (ET AAS). The conventional mixed palladium and magnesium nitrates (Pd–Mg) modifiers, added in solution, were also investigated for comparison. The latter one showed the best performance for aqueous solutions, and the mixed W–Ir and W–Ru permanent modifiers had the lowest stabilizing power. All of the investigated modifiers lost some of their stabilizing power when coal slurries were investigated. The Pd–Mg modifier, pure Ir and Ru, and a mixture of 300 μg W + 200 μg Ir could stabilize Cd at least to a pyrolysis temperature of 600 °C, whereas all the other combinations already failed at temperatures above 500–550 °C. Additional investigations of the supernatant liquid of the slurries supported the assumption that the high acid concentration of the slurries and/or a concomitant leaching out of the coal might be responsible for the reduced stabilizing power of the modifiers. The maximum applicable pyrolysis temperature of 600 °C was not sufficient to reduce the background absorption to a manageable level in the majority of the coal samples. High-resolution continuum source ET AAS revealed that the continuous background absorption was exceeding values of A = 2, and was overlapping with the analyte signal. Although the latter technique could correct for this background absorption, some analyte was apparently lost with the rapidly vaporizing matrix so that the method could not be considered to be rugged. A characteristic mass of 1.0 pg and a detection limit of 0.6 ng g^− 1 could be obtained under these conditions.     

Direct determination of arsenic and antimony in naphtha by electrothermal atomic absorption spectrometry with microemulsion sample introduction and iridium permanent modifier

This paper reports the determination of arsenic and antimony in naphtha by employing electrothermal atomic absorption spectrometry (ETAAS) as the analytical technique. In order to promote the direct determination of the analytes in the very volatile naphtha, the formation of a microemulsion with different surfactants (Triton X-100 and Brij-35) and different chemical modification strategies were tested. The results indicated that Triton X-100 is the best emulsification agent for naphtha in both As and Sb determination when it is employed at a concentration of 1% w/v in the microemulsion. Under these conditions, the microemulsion was stabile for at least 2 h. By using Brij-35 it was possible to achieve good stability only in the first 15 min. Among all chemical modification approaches investigated (Ir permanent modifier, W-Ir permanent modifier, and Pd modifier), the Ir permanent modifier provided better sensitivity for both analytes and allowed a higher pyrolysis temperature, which decreased the background signals at lower levels. Under the best conditions established in this work, an RSD of 4.6% (20 g L^–1) and a detection limit of 2.7 g L^–1 were observed for arsenic. For antimony, an RSD of 4.0% (20 g L^–1) and a detection limit of 2.5 g L^–1 were obtained. The accuracy of the procedure was assessed by analyzing spiked samples of naphtha from different origins.     

Modular synthesis of heparin oligosaccharides

A general, modular strategy for the first completely stereoselective synthesis of defined heparin oligosaccharides is described. Six monosaccharide building blocks (four differentially protected glucosamines, one glucuronic and one iduronic acid) were utilized to prepare di- and trisaccharide modules in a fully selective fashion. Installation of the alpha-glucosamine linkage was controlled by placing a conformational constraint on the uronic acid glycosyl acceptors thereby establishing a new concept for stereochemical control. Combination of disaccharide modules to form trans-uronic acid linkages was completely selective by virtue of C2 participating groups. Coupling reactions between disaccharide modules exhibited sequence dependence. While the union of many glucosamine uronic acid disaccharide modules did not meet any problems, certain sequences proved not accessible. Elaboration of glucosamine uronic acid disaccharide building blocks to trisaccharide modules by addition of either one additional glucosamine or uronic acid allowed for stereoselective access to oligosaccharides as demonstrated on the example of a hexasaccharide resembling the ATIII-binding sequence. Final deprotection and sulfation yielded the fully synthetic heparin oligosaccharides.     

Surface modifications of bioglass immersed in TRIS-buffered solution. A multitechnical spectroscopic study

Bioglass 45S5 is used in the medical field as a bone regenerative material. In fact, when immersed in body fluid, a layer of hydroxy carbonate apatite (HCA), an analogue to the mineral phase that bones are made of, is deposited on its surface. A mechanism that would explain this process has been hypothesized and includes cation leaching from the glass to the solution and formation of both a silica-rich layer and a Ca/P-rich surface layer, prior to the actual crystallization of HCA. The present paper analyzes the dissolution of 2-mum-size particles of Bioglass in TRIS-buffered solution, focusing on the modifications occurring at the surface of the particles. Results from Transmission FT-IR, Raman, and X-ray Photoelectron Spectroscopy were compared in order to obtain this information. In all cases, precise spectral band assignments were obtained by comparing Bioglass spectra, before and after reaction, with the spectra registered on some selected reference samples. The results confirm the hypothesized mechanism of Bioglass reactivity and yield new insights on the surface modifications of the samples. In particular, the following is shown: the strength of the surface H-bonding system and of water coordination decreases during the reaction; surface carbonates, initially mainly bound to Na, are substituted by an increasing amount of Ca-bound carbonates; and the final calcium phosphate layer obtained is very similar, but not identical, to carbonated hydroxyapatite.     

A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6

Successive parameterizations of the GROMOS force field have been used successfully to simulate biomolecular systems over a long period of time. The continuing expansion of computational power with time makes it possible to compute ever more properties for an increasing variety of molecular systems with greater precision. This has led to recurrent parameterizations of the GROMOS force field all aimed at achieving better agreement with experimental data. Here we report the results of the latest, extensive reparameterization of the GROMOS force field. In contrast to the parameterization of other biomolecular force fields, this parameterization of the GROMOS force field is based primarily on reproducing the free enthalpies of hydration and apolar solvation for a range of compounds. This approach was chosen because the relative free enthalpy of solvation between polar and apolar environments is a key property in many biomolecular processes of interest, such as protein folding, biomolecular association, membrane formation, and transport over membranes. The newest parameter sets, 53A5 and 53A6, were optimized by first fitting to reproduce the thermodynamic properties of pure liquids of a range of small polar molecules and the solvation free enthalpies of amino acid analogs in cyclohexane (53A5). The partial charges were then adjusted to reproduce the hydration free enthalpies in water (53A6). Both parameter sets are fully documented, and the differences between these and previous parameter sets are discussed.     

A new approach to (±)-heritonin. The preparation of β-tetralones from allylsilanes and acid chlorides

A new method for the preparation of 4-alkyl-β-tetralones is described, by reaction of arylacetic acid chlorides with allylsilanes. Employing β-tetralone 5, the synthesis of (±)-heritonine and (±)-epi-heritonine, natural piscicides isolated from Heritiera littoralis, was achieved in four steps and 22% overall yield. The key step of this synthesis involved the selenocarbenium ion-mediated elaboration of the butenolide ring of the natural product.