SMART: A data reporting standard for mass spectrometry imaging By Ying Xi,Alexandria L. Sohn,Alena N. Joignant,Stephanie M. Cologna,Boone M. Prentice and David C. Muddiman

Mass spectrometry imaging (MSI) is an important analytical technique that simultaneously reports the spatial location and abundance of detected ions in biological, chemical, clinical, and pharmaceutical studies. As MSI grows in popularity, it has become evident that data reporting varies among different research groups and between techniques. The lack of consistency in data reporting inherently creates additional challenges in comparing intra- and inter-laboratory MSI data. In this tutorial, we propose a unified data reporting system, SMART, based on the common features shared between techniques. While there are limitations to any reporting system, SMART was decided upon after significant discussion to more easily understand and benchmark MSI data. SMART is not intended to be comprehensive but rather capture essential baseline information for a given MSI study; this could be within a study (e.g., effect of spot size on the measured ion signals) or between two studies (e.g., different MSI platform technologies applied to the same tissue type). This tutorial does not attempt to address the confidence with which annotations are made nor does it deny the importance of other parameters that are not included in the current SMART format. Ultimately, the goal of this tutorial is to discuss the necessity of establishing a uniform reporting system to communicate MSI data in publications and presentations in a simple format to readily interpret the parameters and baseline outcomes of the data.     

Density functional model studies of uranyl adsorption on (001) surfaces of kaolinite

The adsorption of uranyl on two types of neutral (001) surfaces of kaolinite, tetrahedral Si(t) and octahedral Al(o), was studied by means of density functional periodic slab model calculations. Various types of model surface complexes, adsorbed at different sites, were optimized and adsorption energies were estimated. As expected, the Si(t) surface was found to be less reactive than the Al(o) surface. At the neutral Al(o) surface, only adsorption at protonated sites is calculated to be exothermic for inner- as well as outer-sphere adsorption complexes, with monodentate coordination being preferred. Adsorption energies as well as structural features of the adsorption complexes are mainly determined by the number of deprotonated surface hydroxyl groups involved. Outer-sphere complexes on both surfaces exhibit a shorter U-O bond to the aqua ligand of uranyl that is in direct contact with the surface than to the other aqua ligands. This splitting of the shell of equatorial U-O bonds is at variance with common expectations for outer-sphere surface complexes of uranyl.     

Numerical simulation of non-Newtonian blood flow in bypass models

The article presents the numerical investigation of non–Newtonian effects of steady blood flow in complete idealized 3–D bypass models, whose native artery is either coronary or femoral with average physiological parameters. Considering the blood to be a generalized Newtonian fluid, the shear–dependent viscosity is described by two well–known macroscopic non–Newtonian models (the Carreau–Yasuda model and the modified Cross model). The results were obtained by own developed computational software based on the pseudo–compressibility approach and on the cell–centred finite volume method defined on unstructured hexahedral grids. (© 2008 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Reactions of selenium dichloride and dibromide with diallyl telluride

Russian Journal of General Chemistry -