Kinetics of transient end-to-end contact of single-stranded DNAs

The formation of the pyrene (Py) dimer radical cation (Py(2)(*+)) was used to measure the kinetics of the intrastrand end-to-end contact rates of single-stranded DNAs (ssDNAs) in the 10 nanoseconds to the tens of microseconds time range. ssDNAs labeled with Py at both ends with the lengths of 3, 6, and 9 mer were synthesized, and the two-photon ionization method was employed to generate a Py(*+), which enables the measurements of the end-to-end contact rates from 10 ns. The formation rate of Py(2)(*+) depended on the length and the sequence of the ssDNAs, and about 1 order of magnitude faster rates were observed for the T-rich ssDNAs compared to those for the corresponding length of A-rich ssDNAs, showing that ssDNA made from adenines is much more rigid than that composed of thymidines. As for the T-rich ssDNAs, the formation of Py(2)(*+) attributed to the misfolded structures was also observed, which is consistent with the configurational diffusion model suggested by Ansari and co-workers.     

Synthetic studies on selective type 4 phosphodiesterase (PDE 4) inhibitors. 1. Structure-activity relationships and pharmacological evaluation of 1,8-naphthyridin-2(1H)-one derivatives

In order to develop novel and orally active phosphodiesterase (PDE) 4 inhibitors, random screening was performed using our chemical library to find YM-10335 possessing the 1,8-naphthyridin-2(1H)-one skeleton which is a completely different structure from rolipram. In this report, the syntheses and structure-activity relationships of the YM-10335 derivatives were described. Some compounds showed selective inhibitory activities for PDE 4 derived from human peripheral blood cells and no effect on the other PDE types (1, 2, 3, 5). The inhibition of the tumor necrosis factor-alpha (TNF-alpha) release in vitro and the carrageenan-induced pleurisy in rats were also described.     

The behaviour of dyes at oil/water interfaces

Summary The adsorption of ionic dyes, the builder effect, and the interaction between ionic dyes and surface active agents were investigated by using the electrocapillarity at oil/water interfaces. The oil phase was the solution of tetra-butylammonium chloride, sodium cetylsulphate, cetylpyridinium chloride or stearylamine in methylisobutylketone, and the water phase contained various dyes in addition to the inorganic electrolyte. The interfacial tension decreased over the anodic (or cathodic) polarization range, when anionic (or cationic) dyes were added to the water phase, thus indicating the dye adsorption at the interface. The interfacial excess of dye ions was found to increase linearly with the cubic roots of dye concentration and of ionic strength of the water phase. The counterion binding took place at the oil/water interface between anionic (or cationic) dyes and positive (or negative) head groups of surface active agent ions adsorbed at the interface. It was found that the equilibrium constants of binding between anionic dyes and cationic surface active agents at the oil/water interface were of the same order of magnitude as, and a little larger than, those obtained at the water bulk phase.

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Zusammenfassung An Öl-Wasser-Grenzflächen wurde die Adsorption ionischer Farbstoffe, die Füllerwirkung und die Wechselwirkung zwischen ionischen Farbstoffen und grenzflächenaktiven Verbindungen mit Hilfe der Elektrokapillarität untersucht. Die Ölphase bestand aus einer Lösung von Tetrabutylammoniumchlorid, Natriumcetylsulfat und Cetylpyridiniumchlorid oder Stearylamin in Methylisobutylketon. Die wässerige Phase enthielt verschiedene Farbstoffe und anorganische Elektrolyte. Die Grenzflächenspannung wurde durch anodische (bzw. kathodische) Polarisation erniedrigt, wenn anionischer (bzw. kationischer) Farbstoff zur Wasserphase gegeben wurde. Dies zeigt an, daß Farbstoff an der Grenzfläche adsorbiert wird. Die Grenzflächenkonzentration des Farbstoffions nimmt linear mit der Kubikwurzel der Farbstoffkonzentration und mit der Ionenstärke zu. Als Gegenionen für die anionischen (bzw. kationischen) Farbstoffe an der Grenzfläche wirken die positiven (bzw. negativen) Endgruppen der Tenside, die ebenfalls in der Grenzschicht adsorbiert sind. Die Gleichgewichtskonstanten für die Wechselwirkung zwischen den ionischen Farbstoffen und den grenzflächenaktiven Verbindungen sind an der Öl-Wasser-Grenzfläche von der gleichen Größenordnung bzw. geringfügig größer als in der wässerigen Volumenphase.

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With 12 figures and 2 tables     

1,1-bis(trimethylsilyl)-1-alkanols as silylcarbene equivalent

Silylcarbenes are generated by the pyrolysis of 1,1-bis(trimethylsilyl)-1-alkanols with elimination of trimethylsilanol.     

Studies of the polymerization of diallyl compounds. XXII. Polymerization of diallyl oxalate in the evolution of carbon dioxide at elevated temperatures

The polymerization of diallyl oxalate was conducted in the presence of radical initiators at a high temperature range of 80–180°C; a large decrease in degree of polymerization, an increase in residual unsaturation of the resulting polymer, and the evolution of carbon dioxide were observed with the elevation of temperature. These findings were reasonably interpreted by considering the dismutation of the uncyclized growing radical to yield the allyl radical, carbon dioxide, and polymer carrying a terminal double bond. The kinetics of the polymerization of diallyl oxalate in the evolution of carbon dioxide at elevated temperatures were also discussed in detail.     

Diffusion-controlled stress-relaxation in polymers,I

Summary The “chemical” relaxation of stress either in Amilan (6-Nylon) or polyvinyl alcohol caused by penetration of water vapor was studied at 40% R. H. and temperatures 15, 30, and 50° C. A theory was presented of the chemical relaxation in a polymer which comprises penetrant-sensitive bonds as the crosslinkages between the molecular chains. This theory assumes the diffusion coefficient of penetrant in the polymer to he independent of concentration and any other factors. It was found that the system Amilan-water behaves in exact conformity with the theory over the ranges of elongation and temperature studied. The diffusion coefficient,D, of water in Amilan could thus be evaluated from the chemical relaxation data, using the theory presented, as functions of elongation and temperature. An ordinary sorption experiment was carried out for this system at 40% R. H. and 16.8° C and demonstrated that the diffusion of water in Amilan was Fickian with a constant diffusion coefficient. Both diffusion coefficients from the chemical relaxation data and the sorption. data were found to agree quite well when the former was extrapolated to zero-strain. The chemical relaxation behavior in the system polyvinyl alcohol-water was markedly different from that expected from the theory, suggesting primarily that the diffusion coefficient of water in this polymer was not constant. A parallel evidence for this fact was obtained from sorption measurements on this system, which demonstrated the diffusion in this system to be dependent both on concentration and time. From these results it may be concluded that the chemical relaxation technique, when combined properly with an adequate theory, can be used not only to evaluate the diffusion coefficient of penetrant in a given polymer solid but also to investigate, at least qualitatively, the type of sorption behavior characteristic of the system under given experimental conditions.

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Zusammenfassung Die chemische Spannungsrelaxation in Amilan (6-Nylon) und Polyvinylalkohol, verursacht durch Eindringen von Wasserdampf, wurde bei 40% r. F. und Temperaturen von 15, 30 und 50° C untersucht. Es wird eine Theorie der chemischen Relaxation von Polymeren vorgelegt, die als empfindliche Bindungen auf das eindringende Niedermolekulare die Vernetzungen zwischen den molekularen Ketten betrachtet. Diese Theorie setzt voraus, da? der Diffusionskoeffizient im Polymeren für die eindringende Substanz unabh?ngig von Konzentration und anderen Faktoren ist. Das System Amilan-Wasser benimmt sich vollkommen entsprechend dieser Theorie in den studierten Verstreckungs- und Temperaturbereiche. Der Diffusionskoeffizient von Wasser in Amilan konnte daher aus der chemischen Relaxation als Funktion von Dehnung und Temperatur ausgewertet werden. Ein normales Quellungsexperiment wurde für das System bei 40% r. F. und 16,8° C ausgeführt und zeigte, da? die Diffusion von Wasser in Amilan dem Fickschen Gesetz mit konstantem Diffusionskoeffizienten folgt. Beide Diffusionskoeffizienten, der aus chemischer Relaxation und der aus Quellungsdaten gewonnene, stimmten sehr gut überein, falls der erstere auf die Dehnung 0 extrapoliert wurde. Die chemische Relaxation des Systems Polyvinylalkohol-Wasser war merklich anders als nach der Theorie erwartet und lie? in erster Linie vermuten, da? der Diffusionskoeffizient von Wasser in diesem Polymeren nicht konstant ist. Eine entsprechende Andeutung wurde aus Quellungsmessungen an diesem System erhalten. Die Diffusion h?ngt von Konzentration und Zeit ab. Aus diesen Resultaten kann gefolgert werden, da? die Technik der Untersuchungen der chemischen Relaxation unter Verwendung einer geeigneten Theorie nicht nur dazu angewendet werden kann, Diffusionskoeffizienten von kleinen Molekülen in einem gegebenen festen Polymeren zu messen, sondern zumindest auch qualitativ den Typ des Quellungsverhaltens festzustellen, der das System unter den gegebenen experimentellen Bedingungen charakterisiert.

     

Effect of substituent on the enantioselectivity for lipase-catalyzed kinetic resolution of glycerol derivatives

The lipase-catalyzed transesterifications of various substituted diphenyl 1,2-ketals of glycerol have been investigated. Efficient modification of the substrate structure with bis(4-bromophenyl) ketal was found to enhance the enantioselectivity up to E=57 at 0 °C.     

Chemical reaction dynamics of PeCB and TCDD decomposition: A tight‐binding quantum chemical molecular dynamics study with first‐principles parameterization

The decomposition reaction dynamics of 2,3,4,4′,5‐penta‐chlorinated biphenyl (2,3,4,4′,5‐PeCB), 3,3′,4,4′,5‐penta‐chlorinated biphenyl (3,3′,4,4′,5‐PeCB), and 2,3,7,8‐tetra‐chlorinated dibenzo‐p‐dioxin (2,3,7,8‐TCDD) was clarified for the first time at atomic and electronic levels, using our novel tight‐binding quantum chemical molecular dynamics method with first‐principles parameterization. The calculation speed of our new method is over 5000 times faster than that of the conventional first‐principles molecular dynamics method. We confirmed that the structure, energy, and electronic states of the above molecules calculated by our new method are quantitatively consistent with those by first‐principles calculations. After the confirmation of our methodology, we investigated the decomposition reaction dynamics of the above molecules and the calculated dynamic behaviors indicate that the oxidation of the 2,3,4,4′,5‐PeCB, 3,3′,4,4′,5‐PeCB, and 2,3,7,8‐TCDD proceeds through an epoxide intermediate, which is in good agreement with the previous experimental reports and consistent with our static density functional theory calculations. These results proved that our new tight‐binding quantum chemical molecular dynamics method with first‐principles parameterization is an effective tool to clarify the chemical reaction dynamics at reaction temperatures. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Structure of aszonalenin,a new metabolite of aspergillus zonatus

Aszonalenin ($\text{1}$) has been isolated from $\text{Aspergillus zonatus}$ together with LL-S490β ($\text{2}$) and the structure of $\text{1}$ has been established by spectroscopic evidences and chemical transformation.     

Polymerization of allyl esters of unsaturated acids. VII. Copolymerization of methyl allyl maleate and fumarate with styrene

Radical copolymerizations of methyl allyl maleate (MAM) and methyl allyl fumarate (MAF) with styrene (St) are carried out in bulk using AIBN as an initiator at 60°C, and their copolymerization behaviors are compared in detail. The different rate features are observed with each other; thus in the MAF-St copolymerization the rate was quite enhanced and, also, the maximum rate was found at the molar ratio of 1:1 in the monomer feed, whereas no maximum phenomenon of the rate was apparent for the MAM—St copolymerization. The copolymerizability of MAF with St was quite high, whereas that of MAM was very poor. The cyclization of MAM or MAF was hindered by the highly reactive St monomer. These results are discussed in terms of the formation of the charge—transfer complex between MAF and St and, furthermore, the cyclocopolymerization kinetics involving the 17 elementary reactions as the propagation reactions.