Ultrahigh-temperature regenerated gratings in boron-codoped germanosilicate optical fiber using 193 nm

Regenerated gratings seeded by type I gratings in boron-codoped germanosilicate optical fiber written with 193 nm are shown to withstand temperatures beyond 1000 degrees C.     

Magnetic properties of a basalt glass and glass-ceramics

Mössbauer, ESR and magnetization measurements have been carried out on a basalt glass heat-treated at different temperatures (600, 650, 700, 800 and 900°C for 8 h). The as-annealed glass and the above five samples showed two-doublet Mössbauer spectra, while the last two samples also showed a six line magnetic hyperfine pattern at 300 K. At 4 K, the last four samples showed magnetic hyperfine patterns, while the as-annealed glass showed that there was already short range magnetic ordering present. High field Mössbauer data at 4 K showed that the surface spins are canted. The minimum quadrupole splitting and the maximum isomer shift around 700°C are related to the improved symmetry of the magnetite lattice. ESR spectra showed paramagnetic resonances at g = 4.3 and g = 2.0 for the first two samples, while the last four samples showed superparamagnetic resonance centred around g = 2.0 at 300 K. At lower temperatures, the 650 and 700°C samples showed ferrimagnetic resonance. Magnetization curves against H/T superpose well both at 300 and 77 K, showing the typical superparamagnetic behaviour of the small magnetite particles. The saturation magnetization (at 270 K) showed a sharp change around 700°C, showing the formation of magnetite. The magnetic structure of the small magnetite particles are discussed in terms of the above results.     

A self-organizing algorithm for molecular alignment and pharmacophore development

We present a method for simultaneous three-dimensional (3D) structure generation and pharmacophore-based alignment using a self-organizing algorithm called Stochastic Proximity Embedding (SPE). Current flexible molecular alignment methods either start from a single low-energy structure for each molecule and tweak bonds or torsion angles, or choose from multiple conformations of each molecule. Methods that generate structures and align them iteratively (e.g., genetic algorithms) are often slow. In earlier work, we used SPE to generate good-quality 3D conformations by iteratively adjusting pairwise distances between atoms based on a set of geometric rules, and showed that it samples conformational space better and runs faster than earlier programs. In this work, we run SPE on the entire ensemble of molecules to be aligned. Additional information about which atoms or groups of atoms in each molecule correspond to points in the pharmacophore can come from an automatically generated hypothesis or be specified manually. We add distance terms to SPE to bring pharmacophore points from different molecules closer in space, and also to line up normal/direction vectors associated with these points. We also permit pharmacophore points to be constrained to lie near external coordinates from a binding site. The aligned 3D molecular structures are nearly correct if the pharmacophore hypothesis is chemically feasible; postprocessing by minimization of suitable distance and energy functions further improves the structures and weeds out infeasible hypotheses. The method can be used to test 3D pharmacophores for a diverse set of active ligands, starting from only a hypothesis about corresponding atoms or groups.     

Single-file diffusion through inhomogeneous nanopores

Strict one-dimensional diffusion, due to geometrical confinement in a nanopore, of an assembly of particles forbids overtaking by each other, giving rise to single-file diffusion (SFD). Smooth carbon nanotube is the epitome of SFD. However, natural nanoporous materials are far from smooth; morphologically, the nanopores' inner surface may provide an inhomogeneous environment for diffusion to occur, giving rise to subnormal diffusion even for an isolated particle diffusing through this fractal landscape. The realm of fractional diffusion (FD) falls under this paradigm. In order to understand the characteristics of SFD through inhomogeneous nanopores, here, we introduce a fractional SFD (FSFD) formalism that deals with a combination of these two phenomena, namely, SFD of particles, each of which are moving subdiffusively in one dimension. For an infinite system, we obtain the mean square displacement (MSD) of the combined entity and our analysis is based on FD equation for particles moving in concert where the single-file correlation is established through reflection principle. For a finite system, we calculate the transport probabilities based on continuous time random walk model. While both the diffusion mechanisms (SFD and FD) acting separately are responsible for slow dynamics at long times, their combined effect leads to ultraslow diffusion. For example, while the long time asymptote of MSD of SFD scales as sqr rt of t, that for FSFD is sqr rt of t(alpha), where alpha is the measure of the extent of inhomogeneity. These findings, which are believed to occur in a natural inhomogeneous nanopore, is also important for design and fabrication of nanofluidic devices through which the fluid delivery can be engineered.     

Photodissociation of noble metal-doped carbon clusters

Noble metal carbide cluster cations (MC(n)(+), M = Cu, Au) are produced by laser vaporization in a pulsed molecular beam and detected with time-of-flight mass spectrometry. Copper favors the formation of carbides with an odd number of carbon atoms, while gold shows marked drops in ion intensity after clusters with 3, 6, 9, and 12 carbons. These clusters are mass selected and photodissociated at 355 nm. Copper carbides with an odd number of carbons fragment by eliminating the metal from the cluster; for the small species it is eliminated as Cu(+) and for the larger species it is lost as neutral Cu. Copper carbides with an even number of carbons also lose the metal, but in addition to this they eliminate neutral C(3). This even-odd alternation, with the even clusters having mixed fragments, holds true for clusters as large as CuC(30)(+). No loss of C(2) is observed for even the largest clusters studied, indicating that fullerene formation does not occur. The gold carbide photodissociation data closely parallel that of copper, with even clusters losing primarily C(3) and odd ones losing gold. Comparisons to known carbon cluster ionization potentials give some insight into the structures of carbon photofragments. DFT calculations performed on CuC(3-11)(+) allow comparisons of the energetics of isomers likely present in our experiment, and metal-carbon dissociation energies help explain the even-odd alternation in the fragmentation channels. The simplest picture of these metal-doped carbides consistent with all the data is that the small species have linear chain structures with the metal attached at the end, whereas the larger species have cyclic structures with the metal attached externally to a single carbon.     

Influence of degree of intercalation on the crystal growth kinetics of poly[(butylene succinate)-co-adipate] nanocomposites

The influence of the degree of intercalation of polymer chains in the two dimensional silicate galleries on the crystallization behavior of poly[(butylene succinate)-co-adipate] (PBSA) is being reported on. The nanocomposites were prepared by melt-blending of PBSA and organically modified montmorillonite (OMMT) in a batch-mixer. Two different types of commercially available OMMTs, with different extents of miscibility of organic modifiers with PBSA, were used, leading to highly delaminated and stacked/intercalated nanocomposite structures as revealed by X-ray diffraction (XRD) patterns and transmission electron microscopy (TEM) observations. The non-isothermal crystallization behavior of PBSA and the nanocomposite samples were studied by differential scanning calorimetry (DSC). Crystal growth kinetics studies showed that when silicate layers are highly delaminated into the PBSA matrix, nucleation behaviors decreased significantly, relative to the stacked/intercalated silicate layers. These observations indicate that the overall crystal growth kinetics retard in delaminated nanocomposites, opposed to increasing in the case of stacked/intercalated nanocomposites. Polarized optical microscopy (POM) observations and light scattering studies indicate that PBSA spherulites are fairly large and more perfectly grown in the case of delaminated nanocomposites, relative to the pure PBSA matrix. The effect of high levels of dispersion of silicate layers in the PBSA matrix on cold crystallization behavior was also studied.     

Coupling Effects of Electrostatic Interactions and Salt Concentration Gradient in Polymer Translocation through a Nanopore: A Coarse-Grained Molecular Dynamics Simulations Study

We study the influence of polymer pore interactions and focus on the role played by the concentration gradient of salt in the translocation of polyelectrolytes (PE) through nanopores explicitly using coarse-grained Langevin dynamics simulations. The mean translocation time is calculated by varying the applied voltage, the pH, and the salt concentration gradient. Changing the pH can alter the electrostatic interaction between the protein pore and the polyelectrolyte chain. The polymer pore interaction is weakened by the increase in the strength of the externally applied electric field that drives translocation. Additionally, the screening effect of the salt can reduce the strong charge-charge repulsion between the PE beads which can make translocation faster. The simulation results show there can be antagonistic or synergistic coupling between the salt concentration-induced screening effect and the drift force originating from the salt concentration gradient thereby affecting the translocation time. Our simulation results are explained qualitatively with free energy calculations.     

Synthesis of 3‐aminomethylidenechroman‐2‐carboxamides by a Sequential One‐pot Three Component Reaction and by Post‐Passerini Condensation Modification

3‐Arylaminomethylidenechroman‐2‐carboxamide has been synthesized by a one‐pot three component reaction among 3‐formylchromone, aromatic amine, and cyclohexyl isocyanide. 3‐(N‐alkylsubstitued/unsubstituted)aminomethylidenechroman‐2‐carboxamides were synthesized by heating Passerini products derived from chromone‐3‐carbaldehyde with different aliphatic primary amines. The products obtained from the reactions of aliphatic primary amines readily form chromeno[2,3‐c]pyrrole when heated in acetic acid. Bischromanones have also been synthesized using this methodology.     

Radial clustergrams: visualizing the aggregate properties of hierarchical clusters

A new radial space-filling method for visualizing cluster hierarchies is presented. The method, referred to as a radial clustergram, arranges the clusters into a series of layers, each representing a different level of the tree. It uses adjacency of nodes instead of links to represent parent-child relationships and allocates sufficient screen real estate to each node to allow effective visualization of cluster properties through color-coding. Radial clustergrams combine the most appealing features of other cluster visualization techniques but avoid their pitfalls. Compared to classical dendrograms and hyperbolic trees, they make much more efficient use of space; compared to treemaps, they are more effective in conveying hierarchical structure and displaying properties of nodes higher in the tree. A fisheye lens is used to focus on areas of interest, without losing sight of the global context. The utility of the method is demonstrated using examples from the fields of molecular diversity and conformational analysis.