Three-dimensional structure of Saccharomyces cerevisiae inorganic pyrophosphatase complexed with cobalt and phosphate ions

Crystals of Saccharomyces cerevisiae inorganic pyrophosphatase suitable for X-ray diffraction study were grown by cocrystallization of the enzyme with cobalt chloride and imidodiphosphate. Saccharomyces cerevisiae is a metal-dependent enzyme which catalyzes hydrolysis of inorganic pyrophosphate to orthophosphate. The three-dimensional structure of this enzyme was solved by the molecular-replacement method and refined at 1.8 Å resolution to an R factor of 19.5%. Cobalt and phosphate ions were revealed in the active centers of both identical subunits (A and B) of the pyrophosphatase molecule. In subunit B, a water molecule was found between two cobalt ions. It is believed that this water molecule acts as an attacking nucleophile in the enzymatic cleavage of the pyrophosphate bond. It was demonstrated that cobalt ions and a phosphate group occupy only part of the potential binding sites (two chemically identical and crystallographically independent subunits have different binding sites). The arrangement of ligands and the structure of the nucleophile-binding site are discussed in relation to the mechanism of action of the enzyme and the nature of the metal activator.     

Karhunen–Loeve representations of turbulent channel flows using the method of snapshots

For three‐dimensional flows with one inhomogeneous spatial coordinate and two periodic directions, the Karhunen–Loeve procedure is typically formulated as a spatial eigenvalue problem. This is normally referred to as the direct method (DM). Here we derive an equivalent formulation in which the eigenvalue problem is formulated in the temporal coordinate. It is shown that this so‐called method of snapshots (MOS) has some numerical advantages when compared to the DM. In particular, the MOS can be formulated purely as a matrix composed of scalars, thus avoiding the need to construct a matrix of matrices as in the DM. In addition, the MOS avoids the need for so‐called weight functions, which emerge in the DM as a result of the non‐uniform grid typically employed in the inhomogeneous direction. The avoidance of such weight functions, which may exhibit singular behaviour, guarantees satisfaction of the boundary conditions. The MOS is applied to data sets recently obtained from the direct simulation of turbulence in a channel in which viscoelasticity is imparted to the fluid using a Giesekus model. The analysis reveals a steep drop in the dimensionality of the turbulence as viscoelasticity is increased. This is consistent with the results that have been obtained with other viscoelastic models, thus revealing an essential generic feature of polymer‐induced drag reduced turbulent flows. Published in 2006 by John Wiley & Sons, Ltd.     

Energetics of an adiabatically-loaded excited anharmonic oscillator

The dependence of the energy characteristics on an adiabatically slowly increasing external force is determined analytically for an anharmonic oscillator. The analytical results are confirmed by a numerical calculation. The nature of the force dependences of the energy characteristics are determined and discussed. Fiz. Tverd. Tela (St. Petersburg) 39, 153–157 (January 1997)     

Shell effects in the symmetric-modal fission of pre-actinide nuclei

Mass distributions of fragments in the low-energy fission of nuclei from ¹⁸⁷Ir to ²¹³At have been analysed. This analysis has shown that shell effects in symmetric-mode fragment mass yields from the fission of pre-actinide nuclei could be described if one assumes the existence of two strongly deformed neutron shells in the arising fragments with neutron numbers N₁ ≈ 52 and N₂ ≈ 68. A new method has been proposed for quantitatively describing the mass distributions of the symmetric fission mode for pre-actinides with A ≈ 180–220.     

Solution of the Problem of Convecitve Heat Exchange for A Two-Dimensional Body in A Low-Prandtl-Number Fluid Flow

It is shown that the exact solution of the problem of convective heat exchange in a low-Prandtl-number fluid flow (Pr ? 1) can be obtained for a two-dimensional body of arbitrary shape provided that the conformal mapping relating the body contour with a circle is known. By way of example, the Joukowsky airfoil is considered.     

Homogeneous Stäckel-type systems

A class of Hamiltonian dynamic systems integrated by the variable separation method is considered. The integration for this class is the inversion of an Abel mapping on hyperelliptic curves. We prove that the derivative of the Abel mapping is the Stäckel matrix, which determines a diagonal Riemannian metric and curvilinear orthogonal coordinate systems in a flat space. Lax representations with the spectral parameter are constructed. The corresponding classicalr-matrices are dynamic. It is shown how the class of pointwise canonical transformations can be naturally generalized using the Abel integral reduction theory.     

Constructing a model transport equation for a massless bose gas and its analytic solution

A model kinetic equation is constructed for the transport of a massless Bose gas. This equation is applied to solve the boundary value problem for the transport of radiation in the half-space occupied by a dispersive medium that is in local thermal equilibrium with the radiation. It is shown that the difference in temperature between the dispersive medium and the incident radiation substantially depends on the character of the scattering properties of the particles in the medium. Translated from Teoreticheskaya i Matematicheskaya Fizika, Vol. 111, No. 3, pp. 462–472, June, 1997.