Tandem mass spectrum of a farnesyl transferase inhibitor--gas-phase rearrangements involving imidazole

Compound 1 (1-(3-chlorophenyl)-4-[1-(4-cyanobenzyl)imidazolylmethyl]-2-piperazinone hydrochloride) is a farnesyl transferase inhibitor intended for treatment of cancer. A detailed analysis of the electrospray ionization mass spectrometry and tandem mass spectrometry data of protonated 1 shows that in the gas phase, upon collision-induced dissociation, this ion undergoes complicated rearrangement and fragmentation. These processes include a novel two-step rearrangement. The first step involves a gas-phase intramolecular S(N)2 reaction that forms an intermediate. The second step consists of three competitive rearrangement/fragmentation pathways of the intermediate, giving rise to protonated 2, protonated methylene-imidazole, and a distonic methylimidazole radical cation. Deuterated 1 was studied under the same experimental conditions, and the results strongly support the proposed two-step rearrangement process. It is noted that the unique structure of 1, especially the imidazole ring of 1, plays a critical role in the rearrangement of protonated 1.     

Tandem mass spectrum of a growth hormone secretagogue: Amide bond cleavage and resultant gas-phase rearrangement

Compound 1 [N-[1(R)-[(1,2-dihydro-1-methylsulfonylspiro[3H-indole-3,4'-piperidin]-1'-yl)carbonyl]-2-(phenylmethyloxy)ethyl]-2-amino-2-methylpropanamide](MW 528) is an orally-active growth hormone secretagogue (GHS). As part of a continual effort to analyze the ESI/MS and MSn data of novel drugs, the ESI/MS and MS/MS data of protonated 1 (m/z 529) are analyzed and reported here. The analyses reveal that under low-energy collision-induced dissociation (CID) in an ion trap or a quadrupole collision cell, protonated 1 undergoes a gas-phase rearrangement to form protonated 3 (m/z 357) which competes with the y- and b-type product ions during the amide bond cleavages of protonated 1. It is proposed that when the b-type ion is formed by cleavage of the piperidine amide bond, piperidine (a neutral species) and the b-ion (a cation) form an ion-neutral complex. In this complex, piperidine functions as a nucleophile to attack the benzylic carbon of the b-ion, and the protonated ether group in the b-ion acts as a leaving group, which results in the migration of the benzylic group to the piperidine amine to form protonated 3. Protonated 2 (an analog of 1) was studied under the same experimental conditions. The results show that protonated 2 undergoes a similar rearrangement to form protonated 3. While this rearrangement is a relatively minor fragmentation process for protonated 1, it is a predominant process for protonated 2. This phenomenon is explained in terms of the proposed ion-neutral-complex mechanism.     

Single-crystalline LaB6 nanowires

Lanthanum hexaboride nanowires produced by chemical vapor deposition are single-crystalline and grown along the [111] direction. Streaks appearing in the electron diffraction spots indicate the lateral direction perpendicular to the nanowire growth axis.     

Chemiluminescence flow system for the determination of ammonium ion

A novel chemiluminescence (CL) system for ammonium ion combined with flow-injection analysis is presented in this paper. It is based on the CL reaction between luminol, immobilized electrostatically on an anion-exchange column, and chlorine electrochemically generated on-line via a platinum electrode from hydrochloric acid in a coulometric cell. Ammonium ion reacts with chlorine and decreases the observed CL intensity. The system responds linearly to ammonium ion concentration in the range 1.0-100 muM, and the detection limit is 0.4 muM. A complete analysis, including sampling and washing, could be performed in 1 min with a relative standard deviation of <6.0%. The system is stable for over 500 determinations and has been applied successfully to the determination of ammonium ion in rainwater samples.     

Bimetallic reactivity. One-site addition two-metal oxidation reaction of dioxygen with a bimetallic dicobalt(II) complex bearing five- and six-coordinate sites

The di-Co(2+) complex, [Co(2+)(mu-OH)(oxapyme)Co(2+)(H(2)O)](+), contains an unsymmetrical binucleating ligand (oxapyme) which provides five- and six-coordinate metal sites when a hydroxide bridge is introduced. This complex absorbs 1 equiv of O(2) irreversibly in solution, producing an unstable di-Co(3+) oxygenated product. The oxygenated product has been studied at low temperatures, where its electronic absorption and (1)H NMR spectra were recorded. It is probable that the oxygenation reaction involves a one-site addition two-metal oxidation reaction to produce an end-on-bonded peroxide ligand at the available coordination site, giving the complex [Co(3+)(mu-OH)(oxapyme)Co(3+)(mu(1)-O(2))](+). Addition of 1 equiv of HClO(4) to this oxygenation product gives a stable peroxide complex, [Co(3+)(mu,eta(1):eta(2)-O(2))(oxapyme)Co(3+)](2+), where one of the oxygen atoms bridges the two metals and is sideways bonded to one of the metals. The formation of this stable complex involves expulsion of the OH(-) bridge. Addition of NO(2)(-) to the sideways-bonded peroxide complex leads to the formation of another stable complex, [Co(3+)(mu,eta(1):eta(1)-O(2))(oxapyme)Co(3+)(NO(2))](+), where the peroxide forms a classic di-end-on bridge to the two metals. Both of these complexes have been fully characterized. Addition of acid to this second stable dioxygen complex leads to the release of HNO(2) and the formation of the mu,eta(1):eta(2) sideways-bonded peroxide complex.     

Self-assembly in palladium(II) and platinum(II) chemistry: the biomimetic approach

The self-assembly of complex cationic structures by combination of cis-blocked square planar palladium(II) or platinum(II) units with bis(pyridyl) ligands having bridging amide units has been investigated. The reactions have yielded dimers, molecular triangles, and polymers depending primarily on the geometry of the bis(pyridyl) ligand. In many cases, the molecular units are further organized in the solid state through hydrogen bonding between amide units or between amide units and anions. The molecular triangle [Pt(3)(bu(2)bipy)(3)(mu-1)(3)](6+), M = Pd or Pt, bu(2)bipy = 4,4'-di-tert-butyl-2,2'-bipyridine, and 1 = N-(4-pyridinyl)isonicotinamide, stacks to give dimers by intertriangle NH.OC hydrogen bonding. The binuclear ring complexes [[Pd(LL)(mu-2)](2)](CF(3)SO(3))(4), LL = dppm = Ph(2)PCH(2)PPh(2) or dppp = Ph(2)P(CH(2))(3)PPh(2) and 2 = NC(5)H(4)-3-CH(2)NHCOCONHCH(2)-3-C(5)H(4)N, form transannular hydrogen bonds between the bridging ligands. The complexes [[Pd(LL)(mu-3)](2)](CF(3)SO(3))(4), LL = dppm or dppp, L = PPh(3), and 3 = N,N'-bis(pyridin-3-yl)-pyridine-2,6-dicarboxamide, and [[Pd(LL)(mu-4)](2)](CF(3)SO(3))(4), LL = dppm, dppp, or bu(2)bipy, L = PPh(3), and 4 = N,N'-bis(pyridin-4-yl)-pyridine-2,6-dicarboxamide, are suggested to exist as U-shaped or square dimers, respectively. The ligands N,N'-bis(pyridin-3-yl)isophthalamide, 5, or N,N'-bis(pyridin-4-yl)isophthalamide, 6, give the complexes [[Pd(LL)(mu-5)](2)](CF(3)SO(3))(4) or [[Pd(LL)(mu-6)](2)](CF(3)SO(3))(4), but when LL = dppm or dppp, the zigzag polymers [[Pd(LL)(mu-6)](x)](CF(3)SO(3))(2)(x) are formed. When LL = dppp, a structure determination shows formation of a laminated sheet structure by hydrogen bonding between amide NH groups and triflate anions of the type NH-OSO-HN.     

The syntheses of 16a'-homo-leurosidine and 16a'-homo-vinblastine. Generation of atropisomers

The synthesis of 16a'-homo-leurosidine was achieved through enantioselective generation of a ring D'-seco-precursor 33 (without requirement of a chiral auxiliary). Its cyclization provided the N(b')-quaternary salt 35 with a configuration corresponding to the atropisomeric form 8a rather than 8b of the target product. On debenzylation, the amine 8a was obtained and found not to isomerize thermally to the anticipated atropisomer 8b (in contrast to its lower homologue, with its formation of natural leurosidine). However, on protonation, a 1:1 mixture of atropisomers of 16a'-homo-leurosidine was obtained. A synthesis of 16a'-homo-vinblastine provided two atropisomers 5a and 5b for the free base at equilibrium (1:2.3 at room temperature in CDCl(3)), with a shift to the major conformer 5b with increasing solvent acidity or decreasing temperature. The synthesis was achieved through a stereoselective inversion of the tertiary hydroxyl function in the enantioselectively generated C-20' progenitor 39.     

IR, MS studies on (+/-)-1-[3-(2-methoxyphenoxy)-2-hydroxypropyl]-4-[(2,6-dimethylphenyl)aminocarbonylmethyl]piperazine dihydrochloride salt

The vibration spectrum and FAB mass spectrum of (+/-)-1-[3-(2-methoxyphenoxy)-2-hydroxypropyl]-4-[(2,6-dimethylphenyl)aminocarbonylmethyl]piperazine dihydrochloride salt was studied. By comparing with the spectra of free base, different bands of IR were found in the NH+ stretching, the NH+ deformation motion, the CH2 of NCH2 group symmetric stretching, the CH2 of N-CH2 group twisting and the CN stretching. FAB shows the basic peak is M + H. Other m/e peaks are consistent with the structure.     

Three-dimensional mesomeric networks assembled from helix-linked sheets: syntheses, structures, and magnetisms

Two new three-dimensional nickel coordination polymers, [Ni3(BTC)2(4,4'-bpy)2(H2O)5].1.5H2O (1) and [Ni(PDB)(4,4'-bpy)].0.5H2O (2)(4,4'-bpy = bipyridine, BTC = 1,2,4-benzenetricarboxylate, PDB = pyridine-3,4-dicarboxylate), have been synthesized under hydrothermal conditions and characterized by elemental analysis, IR, TGA, and single crystal X-ray diffraction. Both compounds contain 2D scaffolding motifs, and most interestingly adjacent scaffolds are connected by infinite helical chains into unique three-dimensional mesomeric networks. Moreover, temperature-dependent magnetic susceptibilities for the two compounds were studied, and ferromagnetic interactions through syn-anti carboxylate bridges between Ni sites have been observed.