Software tool for mining liquid chromatography/multi‐stage mass spectrometry data for comprehensive glycerophospholipid profiling

Electrospray ionization mass spectrometry (ESI‐MS) has emerged as an indispensable tool in the field of lipidomics. Despite the growing interest in lipid analysis, there are only a few software tools available for data evaluation, as compared for example to proteomics applications. This makes comprehensive lipid analysis a complex challenge. Thus, a computational tool for harnessing the raw data from liquid chromatography/mass spectrometry (LC/MS) experiments was developed in this study and is available from the authors on request. The Profiler‐Merger‐Viewer tool is a software package for automatic processing of raw‐data from data‐dependent experiments, measured by high‐performance liquid chromatography hyphenated to electrospray ionization hybrid linear ion trap Fourier transform mass spectrometry (FTICR‐MS and Orbitrap) in single and multi‐stage mode. The software contains three parts: processing of the raw data by Profiler for lipid identification, summarizing of replicate measurements by Merger and visualization of all relevant data (chromatograms as well as mass spectra) for validation of the results by Viewer. The tool is easily accessible, since it is implemented in Java and uses Microsoft Excel (XLS) as output format. The motivation was to develop a tool which supports and accelerates the manual data evaluation (identification and relative quantification) significantly but does not make a complete data analysis within a black‐box system. The software's mode of operation, usage and options will be demonstrated on the basis of a lipid extract of baker's yeast (S. cerevisiae). In this study, we focused on three important representatives of lipids: glycerophospholipids, lyso‐glycerophospholipids and free fatty acids. Copyright © 2010 John Wiley & Sons, Ltd.     

Genuine Equilibria of Three Body Coulomb Configurations

The problem analyzed is the classical non-regularized Hamiltonian formulation of a restricted three body problem under the influence of Coulomb-interactions. Completing the large literature on Helium-like systems we will consider the motions around a fixed positive point charge of (i) one negative and one positive point charge as well as the “classical” issue of (ii) two negative point charges. Thereby, all our considerations deal with arbitrary positive and negative charge values of the mass particles. Here, we give necessary and sufficient conditions for the existence of genuine equilibria in such systems—recall that there are none in the usual classical Helium-atom—and analyze their linearized stability. The thus obtained insights allow us to study the dynamics near such genuine equilibria.     

A single‐crystal neutron diffraction study of RbTiOAsO4

A rubidium titanyl arsenate single‐crystal has been studied by neutron diffraction (λ = 1.207 Å). The polished sample used was 5 × 3 × 2 mm and was cut from a crystal made by top‐seeded solution growth. The crystal showed severe extinction. It was, however, possible to obtain a structural model with well defined oxy­gen sites and reasonable anisotropic displacement parameters.     

Propensity rules for orientation by atom impact: II. Many-state description of direct transitions

This paper contains a theoretical analysis of orientation and alignment created in direct, collision-induced transitions among atomic states with arbitrary angular momentum. Using the natural coordinate frame, general propensity rules are derived in the velocity region of maximum transition probability and their range of validity is investigated. The predictions are tested and illustrated by nine-state calculations for Li(n=2, 3) transitions in Li-He collisions.