Cancer-Associated Mutations of the Adenosine A2A Receptor Have Diverse Influences on Ligand Binding and Receptor Functions

The adenosine A_2A receptor (A_2AAR) is a class A G-protein-coupled receptor (GPCR). It is an immune checkpoint in the tumor micro-environment and has become an emerging target for cancer treatment. In this study, we aimed to explore the effects of cancer-patient-derived A_2AAR mutations on ligand binding and receptor functions. The wild-type A_2AAR and 15 mutants identified by Genomic Data Commons (GDC) in human cancers were expressed in HEK293T cells. Firstly, we found that the binding affinity for agonist NECA was decreased in six mutants but increased for the V275A mutant. Mutations A165V and A265V decreased the binding affinity for antagonist ZM241385. Secondly, we found that the potency of NECA (EC₅₀) in an impedance-based cell-morphology assay was mostly correlated with the binding affinity for the different mutants. Moreover, S132L and H278N were found to shift the A_2AAR towards the inactive state. Importantly, we found that ZM241385 could not inhibit the activation of V275A and P285L stimulated by NECA. Taken together, the cancer-associated mutations of A_2AAR modulated ligand binding and receptor functions. This study provides fundamental insights into the structure–activity relationship of the A_2AAR and provides insights for A_2AAR-related personalized treatment in cancer.     

An Adjustable Cleft Based on an 8-Sulfonamide-2-Naphthoic Acid with Oxyanion Hole Geometry

Cleft type receptors showing the oxyanion hole motif have been prepared in a straightforward synthesis starting from the commercial 3,7-dihidroxy-2-naphthoic acid. The double H-bond donor pattern is achieved by the introduction of a sulfonamide group in the C-8 position of naphthalene and a carboxamide at the C-2 position. This cleft, for which the geometry resembles that of an oxyanion hole, is able to adjust to different guests, as shown by the analysis of the X-ray crystal structures of associates with methanol or acetic acid. Combination of hydrogen bonds and charge-transfer interactions led to further stabilization of the complexes, in which the electron-rich aromatic ring of the receptor was close in space to the electron-deficient dinitroaromatic guests. Modelling studies and bidimensional NMR experiments have been carried out to provide additional information.     

Synthesis of polypyrrole nanoparticles by batch and semicontinuous heterophase polymerizations

Nanoparticles of semiconducting polypyrrole (PPy) were synthesized by batch heterophase (BHP) and semicontinuous heterophase polymerization (SHP) using ferric chloride (FeCl₃), potassium persulfate (KPS), or ammonium persulfate (APS) as the oxidizing agent, sodium dodecyl sulfate (SDS) as surfactant, and ethanol (EtOH) or iso-pentyl alcohol (iC₅OH) as co-surfactants. In all cases, the molar ratios of monomer/oxidizing agent were 1/1. Pyrrol polymerization by BHP and SHP allowed using much lower percentages of surfactant than those employed in microemulsion polymerization of this monomer. The effects of temperature, oxidizing agent, and co-surfactant on conductivity were studied. The polymers were analyzed by transmission electron microscopy (TEM), UV/Visible and Fourier transform infrared (FTIR) spectroscopies, and cyclic voltammetry. Higher PPy conductivities were obtained by polymerizing at 0 °C with FeCl₃ as the oxidizing agent, in the presence of iC₅OH as co-surfactant. When the reaction was carried out by SHP with low reaction times, smaller particles with similar conductivities were obtained compared to those obtained by BHP; the conductivity of PPy decreases with increasing polymerization time, which can be explained by PPy overoxidation.     

Freezing the Dynamic Gap for Selectivity: Motion‐Based Design of Inhibitors of the Shikimate Kinase Enzyme

Shikimate kinase (SK), the fifth enzyme of the aromatic amino acid biosynthesis, is a recognized target for antibiotic drug discovery. The potential of the distinct dynamic apolar gap, which isolates the natural substrate from the solvent environment for catalysis, and the motion of Mycobacterium tuberculosis and Helicobacter pylori SK enzymes, which was observed by molecular dynamics simulations, was explored for inhibition selectivity. The results of the biochemical and computational studies reveal that the incorporation of bulky groups at position C5 of 5‐aminoshikimic acid and the natural substrate enhances the selectivity for the H. pylori enzyme due to key motion differences in the shikimic acid binding domain (mainly helix α5). These studies show that the less‐exploited motion‐based design approach not only is an alternative strategy for the development of competitive inhibitors, but could also be a way to achieve selectivity against a particular enzyme among its homologues.     

Quantum dynamics study of the K+HF(v=0-2,j=0)-->KF+H reaction and comparison with quasiclassical trajectory results

Extensive quantum real wave packet calculations within the helicity decoupling approximation are used to analyze the influence of the HF vibrational excitation on the K+HF(v=0-2,j=0)-->KF+H reaction. Quantum reaction probabilities P and reaction cross sections sigma are compared with corresponding quasiclassical trajectory (QCT) results. Disregarding threshold regions for v=0 and 1 (v=2 has no threshold), both approaches lead to remarkably similar results, particularly for sigma, validating the use of the QCT method for this system. When moving from v=0 to v=1 there is a large increase in P and sigma, as expected for a late barrier system. For v=2 the reaction becomes exoergic and P approximately 0.95 (with the exception of large total angular momenta where centrifugal barriers play a role). While substantial vibrational enhancement of the reactivity is thus seen, it is still quite less than that inferred from experimental data in the intermediate and high collision energy ranges. The origin of this discrepancy is unclear.     

Isotope dilution GC-MS routine method for the determination of butyltin compounds in water

A standard GC-MS instrument with electron impact ionisation has been used to develop a fast, simple and reliable method for the simultaneous determination of monobutyltin (MBT), dibutyltin (DBT) and tributyltin (TBT) in water samples. Isotope dilution analysis (IDA) is used for the determination of species, taking advantage of a commercially available spike solution containing a mixture of MBT, DBT and TBT enriched in ¹¹⁹Sn. Method detection limits for 100-mL samples were between 0.18 and 0.25 ng L⁻¹ for the three butyltin compounds with typical RSD between 2 and 4% at levels between 100 and 10 ng L⁻¹, respectively. Recovery of tin species in spiked samples (natural water, wastewater and seawater) was quantitative. The stability of butyltin compounds in collected seawater samples was also studied. The addition of a 1% (v/v) glacial acetic acid preserved tin species in the samples for at least 5 days at room temperature. The IDA method was finally implemented in a routine testing laboratory and it was subsequently accredited by the Spanish National Accreditation Body according to the requirements of UNE-EN ISO/IEC 17025.     

Structural analysis of cobalt titanate nanoparticles obtained by sol–gel process

In this work we report the synthesis of nanocomposites based on nanoparticles of cobalt titanate and titanium dioxide in their anatase crystalline phase by a sol–gel process. The synthesized nanoparticles of titanate vary from 1 to 6 nm in size. They are embedded in the anatase matrix, and they were obtained from TiO₂ monoliths doped with Co²⁺. The formation of cobalt titanate nanoparticles showed a linear dependence on the cobalt concentration. The cobalt titanate nanocrystals are very stable even at temperatures higher than 1000 °C. The crystalline structures of the samples were examined using high-resolution transmission electron microscopy and X-ray diffraction. Molecular simulation methods were utilized for a better understanding and for improving the analytical data interpretation of the experimental results. PACS 61.16.Bg; 79.60.Jv; 61.46.+w; 61.50.Ah