Fractionation of the human plasma proteome for monoclonal antibody proteomics‐based biomarker discovery 2: Antigen identification by dot‐blot array screening

Immunization with complex mixtures, like the human plasma resulted in the generation of cloned mAb libraries (PlasmaScan? and QuantiPlasma? libraries, with >1000 individual mAbs) reacting with a nonredundant set of antigenic epitopes. mAb proteomics refers to quasi‐hypothesis‐free profiling of plasma samples with nascent or cloned mAb libraries for the discovery of disease‐specific biomarkers. Once mAbs with biomarker potential have been identified, the next task is the determination of cognate antigens recognized by the respective mAbs. To determine the cognate protein antigen corresponding to each individual mAbs in the cloned mAb libraries, we have separated human plasma by consecutive steps of desalting and various chromatography procedures. The process resulted in 783 fractions, which we termed “Analyte Library” (AL). The AL represents the human plasma proteome in relatively low‐protein complexity fractions. Here, to determine the utility of the AL, we selected ten plasma proteins and checked for their presence in the fractions. Among the ten cases, the distribution of four selected plasma proteins matched expectations, as these proteins were present only in a few fractions corresponding to their physical, chemical, and biochemical properties. However, in six cases, we observed “smear” ‐like distribution or complete absence of the proteins, suggesting that protein–protein interactions or protein variants may alter the observed plasma distribution profiles. Nevertheless, we conclude that the AL is an efficient, high throughput tool to complement the mAb biomarker discovery process with cognate protein antigen identification for each mAbs.     

Enantioselective Liquid Chromatographic Separations Using Macrocyclic Glycopeptide-Based Chiral Selectors

Numerous chemical compounds of high practical importance, such as drugs, fertilizers, and food additives are being commercialized as racemic mixtures, although in most cases only one of the isomers possesses the desirable properties. As our understanding of the biological actions of chiral compounds has improved, the investigation of the pharmacological and toxicological properties has become more and more important. Chirality has become a major issue in the pharmaceutical industry; therefore, there is a continuous demand to extend the available analytical methods for enantiomeric separations and enhance their efficiency. Direct liquid chromatography methods based on the application of chiral stationary phases have become a very sophisticated field of enantiomeric separations by now. Hundreds of chiral stationary phases have been commercialized so far. Among these, macrocyclic glycopeptide-based chiral selectors have proved to be an exceptionally useful class of chiral selectors for the separation of enantiomers of biological and pharmacological importance. This review focuses on direct liquid chromatography-based enantiomer separations, applying macrocyclic glycopeptide-based chiral selectors. Special attention is paid to the characterization of the physico-chemical properties of these macrocyclic glycopeptide antibiotics providing detailed information on their applications published recently.     

Relative molar responses of some compounds containing oxygen and nitrogen in GC–MS

Relative molar responses (RMRs) of some straight-chain aliphatic alkanes, ketones, aldehydes, alcohols, carboxylic acids, primary amines, aniline, and nitrobenzene derivatives were investigated related to naphthalene. Most of the respective compounds have not been investigated yet due to their high polarity or high boiling point. The earlier cross section data for oxygenated compounds were changed to RMRs which are more utilizable from an analytical aspect. A linear correlation was found between the RMRs and the carbon atom numbers in primary amines. In the cases of aniline and nitrobenzene derivatives the RMRs were also determined; however, no functional relationship was found. The measurement conditions, i.e., the type of column affect the apparent RMRs of aliphatic primary amines. A midpolar column having a higher maximum operating temperature provides a more sensitive apparent RMR (Rtx-1701) than the basic polar column having a lower maximum temperature (Stabilwax-DB), because a high temperature allows setting a higher injector temperature and a higher amount of compound can reach the ion source. Knowing correlations the quantitative analysis passes into easier and fewer reference materials are needed to investigate a sample having many components, because the sensitivities can be determined from the correlations studied in this paper. This is also valid for aromatic compounds, even though no functional relationship exists.     

Micellar and microemulsion electrokinetic chromatography of hop bitter acids

The elution order of the hop α- and β-acids has been studied under different modes of electrokinetic separation. A model is advanced to explain the shorter migration times of the more hydrophobic β-acids compared to the α-acids in micellar electrokinetic chromatography (MEKC). For quality control of the bitter principles in hops, the ruggedness of electrokinetic separation could be improved by replacing MEKC by microemulsion electrokinetic chromatography (MEEKC).     

Investigation of the Mechanism of Crossover Reaction of p-Dicumyl chloride/BCl3/Isobutylene System by Glass Fiber Optic Photometry

A thorough kinetic investigation was done by measuring the optical density of reaction mixtures of the pDCC/BCl₃ initiating system in the presence and in the absence of monomer and added salt at 500 nm and at −80°C. The absolute rate constants of elementary steps of the ion generation and cationation were evaluated by computer using a fitting method for determination of the parameters occurring in the kinetic model. The key activated species of the mechanism are identified to be colorless donor-acceptor complexes. The color of reaction mixtures is caused by ionized species. On the basis of the calculations and other evidences, a well-established mechanism is proposed. Both -^tC-Cl and -^tC-OH endgroups were found by MS/EI. GPC analysis of the reaction products indicates that the major product is dimer under the reaction conditions applied.     

A New Oxygen Containing Pyclen-Type Ligand as a Manganese(II) Binder for MRI and 52Mn PET Applications: Equilibrium,Kinetic, Relaxometric,Structural and Radiochemical Studies

A new pyclen-3,9-diacetate derivative ligand (H₂3,9-OPC2A) was synthesized possessing an etheric O-atom opposite to the pyridine ring, to improve the dissociation kinetics of its Mn(II) complex (pyclen = 3,6,9,15-tetraazabicyclo(9.3.1)pentadeca-1(15),11,13-triene). The new ligand is less basic than the N-containing analogue (H₂3,9-PC2A) due to the non-protonable O-atom. In spite of its lower basicity, the conditional stability of the [Mn(3,9-OPC2A)] (pMn = −log(Mn(II)), c_L = c_Mn(II) = 0.01 mM. pH = 7.4) remains unaffected (pMn = 8.69), compared to the [Mn(3,9-PC2A)] (pMn = 8.64). The [Mn(3,9-OPC2A)] possesses one water molecule, having a lower exchange rate with bulk solvents (k_ex²⁹⁸ = 5.3 ± 0.4 × 10⁷ s⁻¹) than [Mn(3,9-PC2A)] (k_ex²⁹⁸ = 1.26 × 10⁸ s⁻¹). These mild differences are rationalized by density-functional theory (DFT) calculations. The acid assisted dissociation of [Mn(3,9-OPC2A)] is considerably slower (k₁ = 2.81 ± 0.07 M⁻¹ s⁻¹) than that of the complexes of diacetates or bisamides of various 12-membered macrocycles and the parent H₂3,9-PC2A. The [Mn(3,9-OPC2A)] is inert in rat/human serum as confirmed by ⁵²Mn labeling (nM range), as well as by relaxometry (mM range). However, a 600-fold excess of EDTA (pH = 7.4) or a mixture of essential metal ions, propagated some transchelation/transmetalation in 7 days. The H₂3,9-OPC2A is labeled efficiently with ⁵²Mn at elevated temperatures, yet at 37 °C the parent H₂3,9-PC2A performs slightly better. Ultimately, the H₂3,9-OPC2A shows advantageous features for further ligand designs for bifunctional chelators.     

Combination transitions due to stretching and librations of OH⁻ ions in LiNbO₃

A new absorption band has been detected at 4009 cm?1 in stoichiometric LiNbO? single crystals. Based on present and earlier experiments and recent calculations, this band has been assigned as a combination transition involving the OH stretching and an OH librational mode. The librational mode participating in this combination is of lower fundamental frequency than that contributing to the combination band at 4415 cm1 observed by Gr?ne and Kapphan [J. Phys. Condens. Matter 7, 3051 (1995)].     

Niche width and scale in organizational competition: A computational approach

In some organizational applications, the principle of allocation (PoA) and scale advantage (SA) oppose each other. While PoA implies that organizations with wide niches get punished, SA holds that large organizations gain an advantage because of scale efficiencies. The opposition occurs because many large organizations also possess wide niches. However, analyzing these theoretical mechanisms implies a possible trade-off between niche width and size: if both PoA and SA are strong, then organizations must be either focused or large to survive, resulting in a dual market structure, as proposed by the theory of resource partitioning. This article develops a computational model used to study this trade-off, and investigates the properties of organizational populations with low/high SA and low/high PoA. The model generates three expected core “corner” solutions: (1) the dominance of large organizations in the strong SA setting; (2) the proliferation of narrow-niche organizations in the strong PoA setting; and (3) a bifurcated or dual market structure if both SA and PoA are present. The model also allows us to identify circumstances under which narrow-niche (specialists) or wide-niche (generalists) organizations thrive. We also use the model to examine the claim that concentrated resource distributions are more likely to generate partitioned or bifurcated populations. We also investigate the consequences of environments comprised of ordered versus unordered positions.     

Thermodynamical consistency of the dual-phase-lag heat conduction equation

Dual-phase-lag equation for heat conduction is analyzed from the point of view of non-equilibrium thermodynamics. Its first-order Taylor series expansion is consistent with the second law as long as the two relaxation times are not negative.