On the specificity of the amide VI band for the secondary structure of proteins

In this work we analyzed the specificity of the amide VI band for different types of secondary structure elements in protein structures. This band involves the bending motion of the CO group of the peptide chain that is typically observed in the spectral region from 590 to 490 cm⁻¹. The infrared absorbance spectra of a set of polypeptide model compounds of well known secondary structure was obtained at defined pH, including poly (l-lysine), poly (l-tyrosine), poly (l-alanine) and poly (l-histidine). In addition spectra of membrane proteins from the respiratory chain, namely the NADH:ubiquinone oxidoreductase, the cytochrome c oxidase and its Cu_A fragment, the cytochrome bc₁ complex, a Rieske-type protein and in addition myoglobin, have been comparatively investigated. The systematic analysis of the amide VI band of the polypeptides and the proteins allowed correlating the signal appearing at ∼525 cm⁻¹ to α-helical structures and signals at ∼545 cm⁻¹ to β-sheet contributions. Random coils have been found to contribute at ∼535 cm⁻¹ while the β-turns were observed at ∼560 cm⁻¹.     

Enantiomeric Thin-Layer Chromatographic Assay of Escitalopram in Presence of “In-Process Impurities”

JPC – Journal of Planar Chromatography – Modern TLC - A simple, rapid and precise thin-layer chromatographic (TLC) method for analysis of escitalopram oxalate (ESC-OX) (S-enantiomer) in...     

Adsorption of CO<Subscript>2</Subscript>-containing gas mixtures over amine-bearing pore-expanded MCM-41 silica: application for CO<Subscript>2</Subscript> separation

Adsorption of CO₂, N₂, CH₄ and H₂ on triamine-grafted pore-expanded MCM-41 mesoporous silica (TRI-PE-MCM-41) was investigated at room temperature in a wide range of pressure (up to 25 bar) using gravimetric measurements. The material was found to exhibit high affinity toward CO₂ in comparison to the other species over the whole range of pressure. Column-breakthrough dynamic measurements of CO₂-containing mixtures showed very high selectivity toward CO₂ over N₂, CH₄ and H₂ at CO₂ concentrations within the range of 5 to 50%. These conditions are suitable for effective removal of CO₂ at room temperature from syngas, flue gas and biogas using temperature swing (TS) or temperature-pressure swing (TPS) regeneration mode. Moreover, TRI-PE-MCM-41 was found to be highly stable over hundreds of adsorption-desorption cycles using TPS as regeneration mode.     

The quest for modular nanocages: tbo-MOF as an archetype for mutual substitution, functionalization, and expansion of quadrangular pillar building blocks

A new blueprint network for the design and synthesis of porous, functional 3D metal-organic frameworks (MOFs) has been identified, namely, the tbo net. Accordingly, tbo-MOFs based on this unique (3,4)-connected net can be exclusively constructed utilizing a combination of well-known and readily targeted [M(R-BDC)](n) MOF layers [i.e., supermolecular building layers (SBLs)] based on the edge-transitive 4,4 square lattice (sql) (i.e., 2D four-building units) and a novel pillaring strategy based on four proximal isophthalate ligands from neighboring SBL membered rings (i.e., two pairs from each layer) covalently cross-linked through an organic quadrangular core (e.g., tetrasubstituted benzene). Our strategy permits the rational design and synthesis of isoreticular structures, functionalized and/or expanded, that possess extra-large nanocapsule-like cages, high porosity, and potential for gas separation and storage, among others. Thus, tbo-MOF serves as an archetypal tunable, isoreticular MOF platform for targeting desired applications.     

Preparation and Reactions of 2‐Methyl‐7‐(3‐methyl‐5‐oxo‐1‐phenyl‐2‐pyrazolin‐4‐yl)‐5‐arylthiazolo[3,2‐a]‐pyrimido[4,5‐d]oxazin‐4(5H)‐one

Ethyl 7‐amino‐3‐(3‐methyl‐5‐oxo‐1‐phenyl‐2‐pyrazolin‐4‐yl)‐5‐aryl‐5H‐thiazolo[3,2‐a]pyrimidine‐6‐carboxylate was hydrolyzed with an ethanolic sodium hydroxide and the sodium salt thus formed underwent cyclization with acetic anhydride to afford 2‐methyl‐7‐(3‐methyl‐5‐oxo‐1‐phenyl‐2‐pyrazolin‐4‐yl)‐5‐arylthiazolo[3,2‐a]pyrimido[4,5‐d]oxazin‐4(5H)‐one. This compound was transformed to related heterocyclic systems via its reaction with various reagents. The biological activity of the prepared compounds was tested against Gram positive and Gram negative bacteria as well as yeast‐like and filamentous fungi. They revealed in some cases excellent biocidal properties.     

Synthesis,Antioxidant, Antituomer Activities of Some New Thiazolopyrimidines,Pyrrolothiazolopyrimidines and Triazolopyrrolothiazolopyrimidines Derivatives

Reaction of 6‐amino‐2‐thiouracil 1 with ethyl bromoacetate yielded ethyl 2‐(7‐amino‐2,5‐dioxo‐3,5‐dihydro‐2H‐thiazolo[3,2‐a]pyrimidin‐6‐yl)acetate 2 . Reaction of 2 with sodium ethoxide afforded the pyrrolothiazolopyrimidine derivative 3 . Compound 2 reacted with hydrazine hydrate to give 7‐amino‐thiazolopyrimidine‐carbohydrazide 4 . The latter compound 4 reacted with carbon disulphide to form 7‐amino‐6‐(oxadiazolylmethyl) thiazolopyrimidine 5 . Compound 5 was heated in methanol to yield 9‐thioxotriazolopyrrolothiazolopyrimidine 6 . Also, the reaction of 3 with aromatic aldehydes afforded the diarylmethylenepyrrolothiazolopyrimidine derivatives 7a‐c . The latter compounds 7a‐c underwent cyclocondensation with hydroxylamine to give diaryldioxazolopyrrolothiazolopyrimidine derivatives 8a‐c . The new prepared compounds were subjected for antioxidant and antituomer studies, some of these compounds exhibited promising activity.     

Syntheses of new benzoxazole derivatives

2‐(Arylidene)cyanomethylbenzoxazoles have been prepared in water from benzoxazole‐2‐ylacetonitriles. Using multi‐component reactions, a variety of heterocycles containing benzoxazole and nitrile functionality has been prepared. J. Heterocyclic Chem., (2011).     

Microwave assisted synthesis and unusual coupling of some novel pyrido[3,2-f][1,4]thiazepines

3-Amino-3-thioxopropanamide (1) reacted with ethyl acetoacetate to form 6-hydroxy-4-methyl-2-thioxo-2,3-dihydropyridine-3-carboxamide (2), which reacted with α-haloketones 3 to produce 2,3-disubstituted-8-hydroxy-6-methyl-2H,5H-pyrido[3,2-f]-[1,4]thiazepin-5-ones 4a-c. Benzoylation of 4c led to the formation of the dibenzoate derivative 9. Compounds 4a-c could be prepared stepwise through the formation of S-alkylated derivatives 10a-c. Compounds 2, 4a-c, 9 and 10a-c were prepared using microwave as a source of heat, and gave better yields in shorter times than those achieved by traditional methods. Coupling of 4a-c with arenediazonium chlorides proceeded unusually to give the 6-hydroxy-4-methyl-2-(arylazo)thieno[2,3-b]pyridin-3(2H)-one ring contraction products 14. Structures of the newly synthesized compounds were proven by spectral and chemical methods.     

La relation différence et l'anti-isomorphie

This paper deals with pairs of binary relations defined on the same finite basis and which the 3-element restrictions are isomorphic and those of 5-element restrictions are isomorphic or anti-isomorphic. To each of these pairs, we associate an equivalence relation which yields a decomposition of these relations into classes that we will characterize. As application, we get the treshold of half-reconstruction for tournaments.