Evaluating and clustering retrosynthesis pathways with learned strategy

With recent advances in the computer-aided synthesis planning (CASP) powered by data science and machine learning, modern CASP programs can rapidly identify thousands of potential pathways for a given target molecule. However, the lack of a holistic pathway evaluation mechanism makes it challenging to systematically prioritize strategic pathways except for using some simple heuristics. Herein, we introduce a data-driven approach to evaluate the relative strategic levels of retrosynthesis pathways using a dynamic tree-structured long short-term memory (tree-LSTM) model. We first curated a retrosynthesis pathway database, containing 238k patent-extracted pathways along with ∼55 M artificial pathways generated from an open-source CASP program, ASKCOS. The tree-LSTM model was trained to differentiate patent-extracted and artificial pathways with the same target molecule in order to learn the strategic relationship among single-step reactions within the patent-extracted pathways. The model achieved a top-1 ranking accuracy of 79.1% to recognize patent-extracted pathways. In addition, the trained tree-LSTM model learned to encode pathway-level information into a representative latent vector, which can facilitate clustering similar pathways to help illustrate strategically diverse pathways generated from CASP programs.

Tree-structured long short-term memory neural model learns to understand the retrosynthesis design strategies from patent-extracted retrosynthetic pathway data.     

NMR and potentiometric determination of the high pK values and protonation sequence of dipyridino-hexaaza-28-crown-8 and its interactions with selenate,sulfate and nitrate ions in aqueous solution

The aqueous protonation and anion-binding SeO ₂ ^–/4 SO _2– ⁴ , and NO _– ³ ) constants of the macrocyclic polyamine ligand, dipyridino-hexaaza-28-crown-8(L), were measured in 0.1M KCl using a potentiometric titration technique. The protonation sequence of the aza groups of L was studied in D₂O from the chemical shifts of the nonlabile protons so as to find the charge distribution geometry as a function of pD. The study indicates that in 0.1M KC1 fully protonated L forms stable l: 1 complexes with SeO _2– ⁴ (logK=3.68) and SO _2– ⁴ (logK=3.55), but not with NO _– ³ (logK < l.5). All of the amine pK values were above 6.3, thus allowing the use of the protonated form of this ligand over a wide pH range.     

An ab initio molecular orbital study of the grignard reagents CH3MgCl and [CH3MgCl]2: The Schlenk equilibrium

Ab initio molecular orbital calculations are used to study the modified Schlenk equilibrium: 2RMgCl (RMgCl)² MgR₂ + MgCl₂ Mg(Cl₂)MgR₂ with R=H and CH₃. In the absence of any solvents, calculations indicate that the formation of the various possible bridged dimers (RMgCl)₂ is substantially exothermic. However, using dimethylether as a model solvent, we show that the formation of the dimer (Me₂O)(CH₃)Mg(Cl₂)Mg(CH₃)(OMe₂) is exothermic only when entropic effects are included.     

NLS-tupe equations in 2+1 dimensions: New type of solutions and non-isospectral problems

Integrable systems of NLS type in 2+1 dimensions are studied in three ways: their special solutions by Lie point symmetries, breaking-solutions by the ISM, as well as the non-isospectral problems.Department of Mathematics, Statistics and Computing Science, University of New England, Armidale N.S.W. 2351, Australia. E-mail: zhuhan@neumann.une.edu.au, xhe@metz.une.edu.au Translated from Teoreticheskaya i Matematicheskaya Fizika, Vol. 99, No. 3, pp. 382–389, June, 1994.     

On the Global Stability of Cooperative Systems

Suppose that F is a C¹ cooperative vector field on X, whereX = Rⁿ or Int , or [[p, q]].We prove that the unique equilibrium of F is globally asymptoticallystable if and only if every forward semi-orbit has compact closurein X.