Synthesis of Triarylpyridines in Thiopeptide Antibiotics by Using a C−H Arylation/Ring‐Transformation Strategy

We have described a C?H arylation/ring‐transformation strategy for the synthesis of triarylpyridines, which form the core structure of thiopeptide antibiotics. This synthetic method readily gave 2,3,6‐triarylpyridines in a regioselective manner by a two‐phase approach: C?H arylation (a nickel‐catalyzed decarbonylative Suzuki–Miyaura cross‐coupling and decarbonylative C?H coupling for the synthesis of 2,4‐diaryloxazoles) and ring transformation ([4+2] cycloaddition of 2,4‐diaryloxazoles with (hetero)arylacrylic acids). To showcase these methods, we have accomplished the formal synthesis of thiopeptide antibiotics GE2270 s and amythiamicins.     

Behavior of a small single bubble rising in a rotating flow field

A small single bubble was generated with a single-hole nozzle facing upward in a water bath contained in a rotating cylindrical vessel. The bubble size falls in the surface tension force dominant regime. The vertical, radial, and tangential migration velocities of the bubble were measured with two CCD cameras and a high-speed video camera. The tangential velocity component of water flow was measured with particle image velocimetry. A helical motion of the bubble was observed under every experimental condition. The direction of the helical motion was the same as that of the tangential velocity component. This helical motion is associated with the large initial shape deformation of the bubble near the nozzle exit and the subsequent regular shedding of vortices behind it. The period and amplitude of the helical motion were obtained by analyzing the trajectory of the bubble. These quantities were non-dimensionalized by the volume equivalent bubble diameter and the terminal bubble velocity in the vertical direction and correlated as functions of the Eotvos number. Empirical equations were proposed for the period and amplitude. Originally published in the Journal of JSEM, Vol. 4, No. 2, pp. 38–45 (2004).     

Fluid flow in a rotating cylindrical container with a rotating disk at the fluid surface

Fluid flow in a rotating cylindrical container of radius R_w and height H with a co-axially rotating disk of radius R_d at the fluid surface is numerically investigated. The container and the disk rotate with angular velocities Ω_w and Ω_d, respectively. We solve the axisymmetric Navier-Stokes equations using a finite-volume method. The effects of the relative directions and magnitudes of the disk and container rotations are studied. The calculations are carried out with various ratios of Ω_w and Ω_d for H/R_w = 2 and R_d/R_w = 0.7. Streamlines and velocity vectors in the meridional plane and azimuthal velocities are obtained. The flow fields in the meridional plane are discussed with relation to azimuthal velocities in the interior of the container. The numerical results are also compared with experimental data.     

In situ Raman imaging of osteoblastic mineralization

Hydroxyapatite (HA) is synthesized at early stages of bone formation by osteoblasts. Nondestructive observation of early stages of osteoblastic mineralization provides crucial information for biological mechanism of bone formation. Raman microscopy serves as an ideal tool to observe the osteoblastic mineralization process because it shows the chemical information of the sample at a minimally invasive level. In addition, HA is a marker for osteoblastic mineralization, and HA Raman signal is strong enough to identify mineralized spots in osteoblasts. In this research, we visualized the distribution of HA in cultured mouse osteoblasts by Raman imaging and observed the location of the mineralized spots in the culture. We monitored HA Raman signal from osteoblast culture for 3 days after administrating the osteogenic differentiation medium and observed Raman signal associated with HA. We identified mineralized spots of KUSA‐A1 by Raman imaging constructed from the distribution of HA Raman signal. We successfully visualized the distribution of the mineralized spots in the culture of KUSA‐A1. We compared our Raman images with Alizarin red S staining assay, which was a conventional method to evaluate the mineralization process. Raman imaging of the KUSA‐A1 culture visualized the mineralized spots more accurately than Alizarin red S staining assay. Raman imaging of HA serves as a powerful tool to identify the mineralized spots in an in vitro culture of osteogenic lineage cells. Copyright © 2014 John Wiley & Sons, Ltd.     

Study on the photovoltaic property of Cu4SnS4 synthesized by mechanochemical process

Photovoltaic property of Cu₄SnS₄ (CTS) is studied by employing a superstrate solar cell structure of Mo/CTS/In₂S₃/TiO₂/fluorine-doped tin oxide (FTO) glass for the first time. The CTS absorber layer was prepared by a combination of mechanochemical and doctor blade processes. The annealing effects on the structural, optical and electronic properties of the CTS absorber layer were investigated. The novel CTS absorber layer shows conversion efficiency as high as 2.34% under the standard AM 1.5 condition.     

Ribonuclease protection assay on microchip electrophoresis

We describe the potential of microchip electrophoresis with a Hitachi SV1210, which can be used to evaluate the integrity of total RNA, for the analysis of mRNA expression. The ribonuclease (RNase) protection assay was performed by using microchip electrophoresis with cyanine 5 (Cy5) labeled 248-base antisense RNA probe (riboprobe) encoding adipose-type fatty acid binding protein (A-FABP) as the riboprobe. The fluorescence intensity corresponding to the protected RNA fragment increased in a dose-dependent manner with respect to the complementary strand RNA. Results were obtained in 120 s, and the same amount of Cy5-labeled antisense riboprobe as used in the conventional method can be used. Furthermore, 8 times more sensitive detection of mRNA by microchip electrophoresis could be obtained. An obvious increase in the mRNA expression of A-FABP, which is known as a differentiation marker of adipocytes, occurred during the adipocyte differentiation of 3T3-L1 cells. These results clearly indicate the potential of microchip electrophoresis for the analysis of mRNA expression in cells.     

The Beryllium tetramer: profiling an elusive molecule

The structure and energetics of Be(4) are investigated using state-of-the-art coupled-cluster methods. We compute the optimized bond length, dissociation energy, and anharmonic vibrational frequencies. A composite approach is employed, starting from coupled-cluster theory with single, double, and perturbative triple excitations extrapolated to the complete basis set (CBS) limit using Dunning's correlation consistent cc-pCVQZ and cc-pCV5Z basis sets. A correction for full triple and connected quadruple excitations in the smaller cc-pCVDZ basis set is then added, yielding an approximation to CCSDT(Q)/CBS denoted c～CCSDT(Q). Corrections are included for relativistic and non-Born-Oppenheimer effects. We obtain D(e) = 89.7 kcal mol(-1), D(0) = 84.9 kcal mol(-1), and r(e) = 2.043 A?. Second-order vibrational perturbation theory (VPT2) is applied to a full quartic force field computed at the c～CCSDT(Q) level of theory, yielding B(e) = 0.448 cm(-1) and fundamental frequencies of 666 (a(1)), 468 (e), and 571 (t(2)) cm(-1). Computations on the spectroscopically characterized Be(2) molecule are reported for the purpose of benchmarking our methods. Perturbative estimates of the effect of quadruple excitations are found to be essential to computing accurate parameters for Be(2); however, they seem to exert a much smaller influence on the structure and energetics of Be(4). Our extensive characterization of the Be(4) bonding potential energy surface should aid in the experimental identification of this thermodynamically viable but elusive molecule.     

Anharmonic rovibrational analysis for disilacyclopropenylidene (Si2CH2)

The global minimum on the Si(2)CH(2) electronic singlet potential energy surface has been theoretically predicted to be a peculiar hydrogen bridged (Si···H···Si) disilacyclopropenylidene structure (Si(2)CH(2)). An accurate quartic force field for Si(2)CH(2) has been determined employing ab initio coupled-cluster theory with single and double excitations and a perturbative treatment for triple excitations [CCSD(T)], in combination with the correlation consistent core-valence quadruple zeta (cc-pCVQZ) basis set. The vibration-rotation coupling constants, equilibrium and zero-point vibration corrected rotational constants, centrifugal distortion constants, and harmonic and fundamental vibrational frequencies for six isotopologues of Si(2)CH(2) are predicted using vibrational second-order perturbation theory (VPT2). The anharmonic corrections for the vibrational motions involving the H bridged bonds are found to be more than 5% with respect to the corresponding harmonic vibrational frequencies. In this light, an experimental detection and characterization of disilacyclopropenylidene (Si(2)CH(2)) is highly desired.