How to improve transmissive optics in the very far infrared?

Conclusion We have presented the possibility to make optical coatings on quartz in the FIR and we have got a transmission coefficient as high as 97% at room temperature. It will rise probably close to 100% at liquid helium temperature where the quartz two-phonon difference processes are frozen. The use of polyethylene or TPX is also possible to make plates and lenses. The reflectivity losses are smaller because the refractive index is much smaller, but they cannot be further reduced by any coating because there is no transparent material with n1.2 in the FIR. These lenses are very useful in the FIR (except around 60 cm^–1 if they are made of polyethylene). TPX is quite transparent over the whole FIR range, and also in the visible with nearly the same refractive index as in the FIR. Alignments can be made with visible light, and still work in the FIR.     

Dynamics of an enzymatic substitution reaction in haloalkane dehalogenase

Reactive flux molecular dynamics simulations have been carried out using a combined QM/MM potential to study the dynamics of the nucleophilic substitution reaction of dichloroethane by a carboxylate group in haloalkane dehalogenase and in water. We found that protein dynamics accelerates the reaction rate by a factor of 2 over the uncatalyzed reaction. Compared to the thermodynamic effect in barrier reduction, protein dynamic contribution is relatively small. However, analyses of the friction kernel reveal that the origins of the reaction dynamics in water and in the enzyme are different. In aqueous solution, there is significant electrostatic solvation effect, which is reflected by the slow reorganization relaxation of the solvent. On the other hand, there is no strong electrostatic coupling in the enzyme and the major effect on reaction coordinate motion is intramolecular energy relaxation.     

Direct, two-step synthetic pathway to novel dibenzo[a,c]phenanthridines

Novel dibenzo[a,c]phenanthridines are prepared regioselectively by the application of a straightforward synthetic pathway, starting from new 3,4-diaryl- and 3,4-dihydro-3,4-diarylisoquinolines prepared via Ritter-type heterocyclization and the more classical two-step reductive amination/Bischler-Napieralski cyclization of triarylethanones, respectively. A comparative study of nonphenolic oxidative coupling methodologies provides a highly efficient procedure, based on the hypervalent iodine reagent phenyliodine(III) bis(trifluoroacetate) (PIFA), to accomplish the final coupling step.     

Reactivity differences between molecular and surface silanols in the preparation of homogeneous and heterogeneous olefin metathesis catalysts

The reaction of Mo(N)(CH₂tBu)₃ (1) and SiO_2-(700) generates (SiO)Mo(NH)(CHtBu)(CH₂tBu) (2) when performed in C₆H₆ (material [1/SiO_2-(700)]_C6H6). The grafting occurs presumably by protonation of the nitrido ligand to form an intermediate (SiO)Mo(NH)(CH₂tBu)₃ (3), a pentacoordinated complex, which decomposes into 2 and 2,2-dimethylpropane. While [1/SiO_2-(700)]_C6H6 is highly active in olefin metathesis, [1/SiO_2-(700)]_CH2Cl2 and [1/SiO_2-(700)]_THF are poorly active or inactive catalysts respectively. In contrast, when Mo(N)(CH₂tBu)₃ reacts with a molecular silanol derivative, a soluble model of the surface of SiO_2-(700), it yields a very stable complex, (c-C₅H₉)₇Si₇O₁₂SiO-Mo(NH)(CH₂tBu)₃ (3m), which does not spontaneously generate 2,2-dimethylpropane and an alkylidene complex in contrast to the surface complex. Moreover, 3m does not catalyse olefin metathesis at room temperature as it does not already contain the initiating carbene ligand, and it is necessary to heat up the reaction mixture to 110 °C to obtain low catalytic activity. Nevertheless, the complex 3m generates well-defined metallocarbenes when heated in the presence of PMe₃: (c-C₅H₉)₇Si₇O₁₂SiO-Mo(N)(CHtBu)(P(CH₃)₃)₂ (4m) as a 10:1 mixture of its syn and anti rotamers with the loss of 2 equiv. of 2,2-dimethylpropane.     

Steric Effects on Reaction Rates. Rate and equilibrium constants for oxidation of cyclanols

Equilibrium constants for oxidations of cyclanols by cyclohexanone in benzene have been determined in the presence of aluminium isopropoxide. The free energies of the equilibrium (ΔG_ox) are correlated with equilibrium constants for dissociation of cyanohydrins, rate constants for cyclanol oxidation with chromic acid, ketone reduction with sodium borohydride and trifluoroethanolysis of tosylates.     

Using second-order calibration to identify and quantify aromatic sulfonates in water by high-performance liquid chromatography in the presence of coeluting interferences

We used the Generalized Rank Annihilation Method (GRAM), a second-order calibration method, to quantify aromatic sulfonates in water with high-performance liquid chromatography (HPLC) when interferences coeluted with the analytes of interest. With GRAM, we can quantify in only two chromatographic analyses, one for a calibration sample and one for the unknown sample. The calculated concentrations were not statistically different to those obtained when the chromatographic separation of the unknown sample was modified in order to completely separate the analyte from the interferences before univariate calibration. With GRAM, the concentrations are determined much more quickly because a complete resolution is not required.     

Bis(o-nitrophenyl)ethanediol: A practical photolabile protecting group for ketones and aldehydes

The ketals of bis(o-nitrophenyl)ethanediol and ketones or aldehydes are smoothly deprotected in neutral conditions by irradiation with 350 nm light. The chemical stability in basic, acidic, and oxidizing media makes this form of protection orthogonal to classical protecting groups. Both racemic and enantiopure forms are readily available in two steps from inexpensive starting materials.     

Target-templated de novo design of macrocyclic d-/l-peptides: discovery of drug-like inhibitors of PD-1

Peptides are a rapidly growing class of therapeutics with various advantages over traditional small molecules, especially for targeting difficult protein–protein interactions. However, current structure-based methods are largely limited to natural peptides and are not suitable for designing bioactive cyclic topologies that go beyond natural l-amino acids. Here, we report a generalizable framework that exploits the computational power of Rosetta, in terms of large-scale backbone sampling, side-chain composition and energy scoring, to design heterochiral cyclic peptides that bind to a protein surface of interest. To showcase the applicability of our approach, we developed two new inhibitors (PD-i3 and PD-i6) of programmed cell death 1 (PD-1), a key immune checkpoint in oncology. A comprehensive biophysical evaluation was performed to assess their binding to PD-1 as well as their blocking effect on the endogenous PD-1/PD-L1 interaction. Finally, NMR elucidation of their in-solution structures confirmed our de novo design approach.

In silico design of heterochiral cyclic peptides that bind to a specific surface patch on the target protein (PD-1, in this case) and disrupt protein–protein interactions.