Tuning a High Transmission Ion Guide to Prevent Gas-Phase Proton Exchange During H/D Exchange MS Analysis

Hydrogen/deuterium exchange (HDX) mass spectrometry (MS) for protein structural analysis has been adopted for many purposes, including biopharmaceutical development. One of the benefits of examining amide proton exchange by mass spectrometry is that it can readily resolve different exchange regimes, as evidenced by either binomial or bimodal isotope patterns. By careful analysis of the isotope pattern during exchange, more insight can be obtained on protein behavior in solution. However, one must be sure that any observed bimodal isotope patterns are not artifacts of analysis and are reflective of the true behavior in solution. Sample carryover and certain stationary phases are known as potential sources of bimodal artifacts. Here, we describe an additional undocumented source of deuterium loss resulting in artificial bimodal patterns for certain highly charged peptides. We demonstrate that this phenomenon is predominantly due to gas-phase proton exchange between peptides and bulk solvent within the initial stages of high-transmission conjoined ion guides. Minor adjustments of the ion guide settings, as reported here, eliminate the phenomenon without sacrificing signal intensity. Such gas-phase deuterium loss should be appreciated for all HDX-MS studies using such ion optics, even for routine studies not focused on interpreting bimodal spectra.

Open image in new window

Graphical Abstract ?

     

Understanding ion sensing in Zn(II) porphyrins: spectroscopic and computational studies of nitrite/nitrate binding

The development of effective sensor elements relies on the ability of a chromophore to bind an analyte selectively and then study the binding through changes in spectroscopic signals. In this report the ability of Zn(II) Tetraphenyl Porphyrin (ZnTPP) to selectively bind nitrite over nitrate ions is examined. The results of Benesi-Hildebrand analysis reveals that ZnTPP binds NO(2)(-) and NO(3)(-) ions with association constants of 739 ± 70 M(-1) and 134 ± 15 M(-1), respectively. Interestingly, addition of a pyridine ligand to the fifth coordination site of the Zn(II) center enhances ion binding with the association constants increasing to 71,300 ± 8,000 M(-1) and 18,900 ± 3,000 M(-1) for nitrite and nitrate, respectively. Density functional theory calculations suggest a binding mechanism through which Zn(II)-porphyrin interactions are disrupted by ligand and base coordination to Zn(II), with Zn(II) having more favorable overlap with nitrite orbitals, which are less delocalized than nitrate orbitals. Overall, these provide new insights into the ability to tune the affinity and selectivity of porphyrin based sensors utilizing electronic factors associated with the central Zn(II) ion.     

On the estimation of serum and plasma protein from specific gravity measurements

Serum and Plasma Protein is now frequently estimated from Specific Gravity measurements, it being assumed that the Specific Gravity is always a simple linear function of the total protein.In the present paper, evidence is given of the very large errors to which this assumption may lead.452 simultaneous estimations of total protein and Specific Gravity were made. The maximum error due to the above assumption was found to be 1.76 g/100 ml.     

Molecular motion of a nickel-bis(dithiolato) complex in solution

The molecular motion of the planar bis(maleonitriledithiolato)nickel anion, Ni(mnt)(2)(-), has been studied as a function of temperature using electron spin resonance (ESR) in several polar solvents; they are ethyl alcohol, eugenol, dimethyl phthalate, tri-n-butyl phosphate, tris(2-ethyl-hexyl)phosphate, diglyme, and a dimethylformamide-chloroform mixed solvent. Calculated spectra in agreement with the experimental X-band spectra are obtained using axially symmetric reorientation when the long in-plane axis is the unique (parallel) axis of the rotational diffusion tensor with D parallel/D perpendicular = 3.0-4.0; D parallel and D perpendicular are the diffusion constants for reorientation about the parallel and perpendicular axes, respectively. The reorientational model required for the simulations is either in or close to the Brownian rotational diffusion limit. In the slow motional (low temperature) region, the spectra can be simulated using the glassy g values. As the temperature increases, however, agreement is obtained only if the intermediate g factor, g(y), for the non-axially symmetric Zeeman interaction increases while g(x), g(z), and the motional model remain unchanged; this scheme and others for which gx and g(z) are possibly temperature-dependent are discussed. The values of D perpendicular from the simulations are in general agreement with those from earlier analyses of the width of the central spectral feature. The simulations and width analyses indicate (as do electrochemical, conductivity, and vapor-phase osmometry data) that the paramagnetic species reorienting in solution has a shape similar to that of the Ni(mnt)(2)(-) ion.     

Filament sets and decompositions of homogeneous continua

This paper applies the concepts introduced in the article: Filament sets and homogeneous continua [J.R. Prajs, K. Whittington, Filament sets and homogeneous continua, Topology Appl. 154 (8) (2007) 1581-1591, doi:10.1016/j.topol.2006.12.005] to decompositions of homogeneous continua. Several new or strengthened results on aposyndesis are given. Newly defined decompositions are discussed. A proposed classification scheme for homogeneous continua is shown to be mostly invariant under Jones' aposyndetic decomposition.     

Monte carlo study of the interacting self-avoiding walk model in three dimensions

We consider self-avoiding walks on the simple cubic lattice in which neighboring pairs of vertices of the walk (not connected by an edge) have an associated pair-wise additive energy. If the associated force is attractive, then the walk can collapse from a coil to a compact ball. We describe two Monte Carlo algorithms which we used to investigate this collapse process, and the properties of the walk as a function of the energy or temperature. We report results about the thermodynamic and configurational properties of the walks and estimate the location of the collapse transition.