Phosphate anion chelation and base-pairing. Design of receptors and carriers for nucleotides and nucleotide analogues

Abstract

A rational approach to the development of effective carriers for the through-membrane transport of GMP (guanosine 5′-monophosphate) at neutral pH is described. The approach detailed is a ditopic one predicated on the use of nucleic acid-base ‘nucleobase’ subunits to provide stabilizing hydrogen bonding interactions and the use of expanded porphyrin anion binding subunits to provide phosphate chelation. Appropriate background studies along with the synthesis of a functioning state-of-the-art system are reported. In addition, the reasons for preparing such GMP transport systems are presented in full.     

Novel organomagnesium reagents in synthesis. Catalytic cyclomagnesiation of allenes in the synthesis of N-, O-, and Si-substituted 1Z,5Z-dienes

An efficient method for the synthesis of valuable N-, O-, and Si-containing 1Z,5Z-diene compounds was developed. The method comprises Cp₂TiCl₂-catalyzed homo- and cross-cyclomagnesiation of 1,2-dienes by Grignard reagents (RMgR′) to give 2,5-dialkylidenemagnesacyclopentanes in up to 96% yield. This approach was successfully used in the synthesis of 5Z,9Z-dienoic acids, precursors of acetogenins and insect pheromones.     

Enumeration of substitutional isomers with restrictive mutual positions of ligands: I. Overall counts

We address systematics for the enumeration of substitutional isomers when there is constrained positioning of ligands on a molecular skeleton. One constraint involves ‘restrictive ligands’ where two of the same kind are forbidden to occupy adjacent sites in a molecular skeleton. This may arise because of steric hindrance, or because of groups which in neighbor proximity react to eliminate one. For instance, no pair of –OH groups attach to the same C atom in a molecular skeleton. In another case, malonic acid residues decarboxylate leaving no more than one decarboxylation in each residue. The enumeration with such restrictive ligands may be addressed via a Polya-theoretic cycle index hybridized with the graph-theoretic independence polynomial (when there is just a single such neighbor-excluding ligand and another which is not), while more generally a hybridization with the chromatic polynomial is needed. Another substitional-isomer constraint involves bidentate ligands, with each ligand-part occupying adjacent sites, and possibly also with additional separate unidentate ligands. Here, the set of all pure & mixed such ligand placements is analytically represented by a ‘symmetry-reduced’ matching polynomial (which is a hybrid now of the matching polynomial and Polya’s cycle index). This result gives the generating function for isomer enumeration, taking into account every possible so-restricted assortment of the employed ligands. Here we make such novel hybridizations (for these and other graphtheoretic polynomials) to deal with such oft-encountered chemical problems, which nevertheless transcend typical earlier unconstrained formulizations. Further subsymmetry classification & enumerations, along with examples are considered in a further article.     

Weighted Information and Weighted Entropic Inequalities for Qutrit States

We review the notion of weighted quantum entropy and consider the weighted quantum entropy for bipartite and noncomposite quantum systems. We extend the subadditivity condition, the inequality known for the weighted entropy information, to the case of indivisible qudit system, such as a qutrit. We discuss the new inequality for the qutrit density matrix for different weights and states, as well as the role of weighted entropy with respect to nonlinear quantum channels.     

Self-Sorting Supramolecular Polymerization: Helical and Lamellar Aggregates of Tetra-Bay-Acyloxy Perylene Bisimide

A new perylene bisimide (PBI), with a fluorescence quantum yield up to unity, self-assembles into two polymorphic supramolecular polymers. This PBI bears four solubilizing acyloxy substituents at the bay positions and is unsubstituted at the imide position, thereby allowing hydrogen-bond-directed self-assembly in nonpolar solvents. The formation of the polymorphs is controlled by the cooling rate of hot monomer solutions. They show distinctive absorption profiles and morphologies and can be isolated in different polymorphic liquid-crystalline states. The interchromophoric arrangement causing the spectral features was elucidated, revealing the formation of columnar and lamellar phases, which are formed by either homo- or heterochiral self-assembly, respectively, of the atropoenantiomeric PBIs. Kinetic studies reveal a narcissistic self-sorting process upon fast cooling, and that the transformation into the heterochiral (racemic) sheetlike self-assemblies proceeds by dissociation via the monomeric state.     

Synthesis of Supported Heterogeneous Catalysts by Laser Ablation of Metallic Palladium in Supercritical Carbon Dioxide Medium

To obtain a supported heterogeneous catalyst, laser ablation of metallic palladium in supercritical carbon dioxide was performed in the presence of a carrier, microparticles of γ-alumina. The influence of the ablation process conditions—including supercritical fluid density, ablation, mixing time of the mixture, and laser wavelength—on the completeness and efficiency of the deposition of palladium particles on the surface of the carrier was studied. The obtained composites were investigated by scanning and transmission electron microscopy using energy dispersive spectroscopy. We found that palladium particles were nanosized and had a narrow size distribution (2–8 nm). The synthesized composites revealed high activity as catalysts in the liquid-phase hydrogenation of diphenylacetylene.     

A class of Steiner 4-wise balanced designs derived from preparata codes

The minimum weight codewords in the Preparata code of length n = 4^m are utilized for the construction of an infinite family of Steiner S(4, {5, 6}, 4^m + 1) designs for any m ≥ 2. © 1996 John Wiley & Sons, Inc.     

Selenium Dihalides Click Chemistry: Highly Efficient Stereoselective Addition to Alkynes and Evaluation of Glutathione Peroxidase-Like Activity of Bis(E-2-halovinyl) Selenides

Highly efficient stereoselective syntheses of novel bis(E-2-chlorovinyl) selenides and bis(E-2-bromovinyl) selenides in quantitative yields by reactions of selenium dichloride and dibromide with alkynes were developed. The reactions proceeded at room temperature as anti-addition giving products exclusively with (E)-stereochemistry. The glutathione peroxidase-like activity of the obtained products was estimated and compounds with high activity were found. The influence of substituents in the products on their glutathione peroxidase-like activity was discussed.