UV Spectrophotometry: Improvements in the Study of the Degree of Acetylation of Chitosan

A simple and rapid method for determining the degree of N‐acetylation (DA) of chitosan by ultraviolet spectrophotometry using double beam equipment is proposed. D ‐Glucosamine (GlcN) hydrochloride and N‐acetylglucosamine (GlcNAc) were used as model substances, and chitosan solutions in different solvents were studied. The best results were obtained from 0.1 M HCl solutions, with high reproducibility and in good agreement with those given by conductometric titration, FT‐IR, ¹H NMR and elemental analysis.

Correlation between DA obtained by UV and DA obtained by conductometric titration.     

ISO 17025 quality system in a university environment

The experience of working under an ISO 17025 compliant quality system in a university environment is described in the example of the Testing Centre of University of Tartu. University-specific features of the quality system include that the Testing Centre acts as the “quality system server” for other units of the university and graduate students participate in the work carried out under the quality system. The benefits for the university and the graduate students are discussed. It is concluded that implementation of an ISO 17025 compatible quality system in a university is fully accomplishable and gives significant added value to the university by helping to destroy the ivory tower perception about universities and by introducing real-world flavour into the studies and broaden the minds (quality awareness) of the students.     

Detecting “bad” regression models: multicriteria fitness functions in regression analysis

Regression models with good fitting but no predictive ability are sometimes chance correlations and often show some pathological features such as multicollinearity, overfitting, and inclusion of noisy/spurious variables. This problem is well known and of the utmost importance. The present paper proposes some criteria that are to be fulfilled as conditions for model acceptability, the aim being to recognize linear regression models with pathology. These criteria have been thought of in order to face the following problems:

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model instability due to outliers and influential objects;

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predictor multicollinearity;

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redundancy in explanatory variables;

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overfitting due to chance factors.

A multicriteria fitness function based on the maximization of the Q² statistics under a set of tests is proposed here. This new fitness function can also be used in model searching by variable selection approaches in order to obtain a final optimal population of models. Computations on the Selwood data set are reported to illustrate the use of this multicriteria fitness function in model searching.     

Clustering of catalytic nanocompartments for enhancing an extracellular non-native cascade reaction

Compartmentalization is fundamental in nature, where the spatial segregation of biochemical reactions within and between cells ensures optimal conditions for the regulation of cascade reactions. While the distance between compartments or their interaction are essential parameters supporting the efficiency of bio-reactions, so far they have not been exploited to regulate cascade reactions between bioinspired catalytic nanocompartments. Here, we generate individual catalytic nanocompartments (CNCs) by encapsulating within polymersomes or attaching to their surface enzymes involved in a cascade reaction and then, tether the polymersomes together into clusters. By conjugating complementary DNA strands to the polymersomes'' surface, DNA hybridization drove the clusterization process of enzyme-loaded polymersomes and controlled the distance between the respective catalytic nanocompartments. Owing to the close proximity of CNCs within clusters and the overall stability of the cluster architecture, the cascade reaction between spatially segregated enzymes was significantly more efficient than when the catalytic nanocompartments were not linked together by DNA duplexes. Additionally, residual DNA single strands that were not engaged in clustering, allowed for an interaction of the clusters with the cell surface as evidenced by A549 cells, where clusters decorating the surface endowed the cells with a non-native enzymatic cascade. The self-organization into clusters of catalytic nanocompartments confining different enzymes of a cascade reaction allows for a distance control of the reaction spaces which opens new avenues for highly efficient applications in domains such as catalysis or nanomedicine.

Compartmentalization is fundamental in nature, where the spatial segregation of biochemical reactions within and between cells ensures optimal conditions for the regulation of cascade reactions.     

Control of cell growth direction by direct fabrication of periodic micro‐ and submicrometer arrays on polymers

In this work, we describe a laser‐assisted microstructuring technique called Direct Laser Interference Patterning to produce topographical cues for tumor cells in a one‐step process. Line‐like patterns with spatial periods ranging from 500 nm to 10 μm are fabricated on polyimide (PI) films. The resulting structures exhibit a well‐defined shape and quality even for patterns with small periodic distances. Subsequently, the behavior of mouse mammary adenocarcinoma cells over those structures is evaluated. The results show that cell growth is well aligned to the direction of the patterns (over 60% lying within 0° to 15° to either side of the surface lines) for all evaluated structure sizes. Moreover, cells grown on patterns with 500 nm spatial period are the most narrowly aligned (up to 80% found between 0° and 15°), showing the potential of the technique. The fabrication process of the PI patterns is supported by a mathematical model of the underlying photo‐chemical ablation process. © 2011 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2012     

Analytical approximate solutions to the Thomas-Fermi equation

The purpose of this paper is to show how to use the Optimal Homotopy Asymptotic Method (OHAM) to solve the nonlinear differential Thomas-Fermi equation. Our procedure does not depend upon small parameters and provides us with a convenient way to optimally control the convergence of the approximate solutions. An excellent agreement was found between our approximate results and numerical solutions, which prove that OHAM is very efficient in practice, ensuring a very rapid convergence after only one iteration.     

Isometric actions on pseudo-Riemannian nilmanifolds

This work deals with the structure of the isometry group of pseudo-Riemannian 2-step nilmanifolds. We study the action by isometries of several groups and we construct examples showing substantial differences with the Riemannian situation; for instance, the action of the nilradical of the isometry group does not need to be transitive. For a nilpotent Lie group endowed with a left-invariant pseudo-Riemannian metric, we study conditions for which the subgroup of isometries fixing the identity element equals the subgroup of isometric automorphisms. This set equality holds for pseudo- $H$ -type Lie groups.     

CHARMM‐GUI Membrane Builder toward realistic biological membrane simulations

CHARMM‐GUI Membrane Builder, http://www.charmm‐gui.org/input/membrane , is a web‐based user interface designed to interactively build all‐atom protein/membrane or membrane‐only systems for molecular dynamics simulations through an automated optimized process. In this work, we describe the new features and major improvements in Membrane Builder that allow users to robustly build realistic biological membrane systems, including (1) addition of new lipid types, such as phosphoinositides, cardiolipin (CL), sphingolipids, bacterial lipids, and ergosterol, yielding more than 180 lipid types, (2) enhanced building procedure for lipid packing around protein, (3) reliable algorithm to detect lipid tail penetration to ring structures and protein surface, (4) distance‐based algorithm for faster initial ion displacement, (5) CHARMM inputs for P₂₁ image transformation, and (6) NAMD equilibration and production inputs. The robustness of these new features is illustrated by building and simulating a membrane model of the polar and septal regions of E. coli membrane, which contains five lipid types: CL lipids with two types of acyl chains and phosphatidylethanolamine lipids with three types of acyl chains. It is our hope that CHARMM‐GUI Membrane Builder becomes a useful tool for simulation studies to better understand the structure and dynamics of proteins and lipids in realistic biological membrane environments. © 2014 Wiley Periodicals, Inc.