A statistical analysis of the liquid-solid equilibrium temperatures in binary dotriacontane + ester systems

The liquid-solid equilibrium temperature in the binary systems between n-dotriacontane and methyl or ethyl octadecanoate and methyl nonadecanoate are determined in order to obtain the interchange parameters between CH₃ or CH₂ and COO groups, by means of the statistics of group interaction.     

Stereoselectivities of benzonitrile oxide cycloadditions to cis disubstituted cyclopentenes and dihydrofurans

Benzonitrile oxide cycloadds preferentially $\text{anti}$ to the substituents of $\text{cis}$-3,5-di-X-cyclopentenes, where X = OMe, OAc, OCOPh, Br, Cl, and OH. Higher stereoselectivities are found for $\text{cis}$-2,5-di-X-2,5-dihydrofurans. The origins of these selectivities, and contrasts with acyclic and cyclobutene analogs, are described.     

Probing side-chain dynamics in high molecular weight proteins by deuterium NMR spin relaxation: an application to an 82-kDa enzyme

New NMR experiments for the measurement of side-chain dynamics in high molecular weight ( approximately 100 kDa) proteins are presented. The experiments quantify (2)H spin relaxation rates in (13)CH(2)D or (13)CHD(2) methyl isotopomers and, for applications to large systems, offer significant gains both in sensitivity (2-3-fold) and resolution over previously published HSQC schemes. The methodology has been applied to investigate Ile dynamics in the 723-residue, single polypeptide chain enzyme, malate synthase G. Methyl-axis order parameters, S(axis), characterizing the amplitudes of motion of the methyl groups, have been derived from both (13)CH(2)D and (13)CHD(2) probes and are in excellent agreement. The distribution of order parameters is trimodal, reflecting the range of dynamics that are available to Ile residues. A reasonable correlation is noted between and inverse temperature factors from X-ray studies of the enzyme. The proposed methodology significantly extends the range of protein systems for which side-chain dynamics can be studied.     

Investigating the breakup dynamics of dihydrogen sulfide ions recombining with electrons

This paper presents results concerning measurements of the dissociative recombination (DR) of dihydrogen sulfide ions. In combination with the ion storage ring CRYRING an imaging technique was used to investigate the breakup dynamics of the three-body channel in the DR of 32SD2(+). The two energetically available product channels S(3P) + 2D(2S) and S(1D) + 2D(2S) were both populated, with a branching fraction of the ground-state channel of 0.6(0.1). Information about the angle between the two deuterium atoms upon dissociation was obtained together with information about how the available kinetic energy was distributed between the two light fragments. The recombination cross sections as functions of energy in the interval of 1 meV to 0.3 eV in the center-of-mass frame are presented for 34SH2(+). The thermal rate coefficient for the DR of 34SH2(+) was determined to be (4.8+/-1.0) x 10(-7)(T/300)(-0.72+/-0.1) cm3 s(-1) over this interval.     

Targeting a Dark Excited State of HIV‐1 Nucleocapsid by Antiretroviral Thioesters Revealed by NMR Spectroscopy

HIV‐1 nucleocapsid (NCp7) is a two Cys₂HisCys zinc knuckle (N‐Zn and C‐Zn) protein that plays a key role in viral replication. NCp7 conformational dynamics is characterized by NMR relaxation dispersion and chemical exchange saturation transfer measurements. While the N‐Zn knuckle is conformationally stable, the C‐Zn knuckle interconverts on the millisecond timescale between the major state, in which the zinc is coordinated by three cysteines and a histidine, and two folded minor species (with populations around 1 %) in which one of the coordination bonds (Cys413‐Sγ‐Zn or His421‐N?2‐Zn) is hydrolyzed. These findings explain why antiretroviral thioesters specifically disrupt the C‐Zn knuckle by initial acylation of Cys413, and show that transient, sparsely‐populated (“dark”), excited states of proteins can present effective targets for rational drug design.     

Dissociative recombination study of Na+ (D2O) in a storage ring

The dissociative recombination of Na(+)(D(2)O) ion has been studied at the heavy-ion storage ring CRYRING (Manne Siegbahn Laboratory, Stockholm University). The cross section has been measured as a function of center-of-mass energy ranging from 1 meV to 0.1 eV and found to have an E(-1.37) dependence. The rate coefficient has been deduced to be (2.3+/-0.32)x10(-7)(T(e)/300)(-0.95+/-0.01) cm(3) s(-1) for T(e)=50-1000 K. The branching ratios have been measured at 0 eV. Of the four energetically accessible dissociation channels, three channels are found to occur although the channel that breaks the weak Na(+)-D(2)O bond is by far dominant.     

Synthesis and Characterization of Polyoxometalate–Polyamino Dendritic Hybrid Compounds

Organic–inorganic hybrid compounds were prepared by the reaction of a tin chloride-substituted polyoxometalate, [PSn(Cl)W₁₁O₃₉]⁴⁻ with tris(2-aminoethyl)amine, and poly(propylene)imine (DAB-Am) tetraamine and octaamine dendrimers. Translational diffusion coefficients of the hybrid compounds were measured in DMSO-d ₆ by the stimulated echo diffusion (STE) NMR technique. Molecular radii were derived from the diffusion coefficients by the Stokes–Einstein equation and appeared to be incorrect because of fast exchange on the NMR time scale of the counter cation in the solution, which led to an averaging of the NMR signal and high diffusion coefficients. An effective hydrodynamic diameter of the [PSn(Cl)W₁₁O₃₉]⁴⁻–polypropylenimine octaamine hybrid adduct was measured in a light scattering experiment.     

Four-dimensional NMR spectroscopy of a 723-residue protein: chemical shift assignments and secondary structure of malate synthase g

A four-dimensional (4-D) NMR study of Escherichia coli malate synthase G (MSG), a 723-residue monomeric enzyme (81.4 kDa), is described. Virtually complete backbone (1)HN, (15)N, (13)C, and (13)C(beta) chemical shift assignments of this largely alpha-helical protein are reported. The assignment strategy follows from our previously described approach based on TROSY triple resonance 4-D NMR spectroscopy [Yang, D.; Kay, L. E. J. Am. Chem. Soc. 1999, 121, 2571-2575. Konrat, R; Yang, D; Kay, L. E. J. Biomol. NMR 1999, 15, 309-313] with a number of modifications necessitated by the large size of the protein. A protocol for refolding deuterated MSG in vitro was developed to protonate the amides deeply buried in the protein core. Of interest, during the course of the assignment, an isoaspartyl linkage in the protein sequence was unambiguously identified. Chemical shift assignments of this system are a first step in the study of how the domains of the protein change in response to ligand binding and for characterizing the dynamical properties of the enzyme that are likely important for function.