On the Importance of H-Bonding Interactions in Organic Ammonium Tetrathiotungstates

Summary. Four new organic ammonium tetrathiotungstates (N–Me–enH₂)[WS₄] (1), (N,N′-dm-1,3-pnH₂)[WS₄] (2), (1,4-bnH₂)[WS₄] (3), and (mipaH)₂[WS₄] (4), (N–Me–enH₂ = N-methylethylenediammonium, N,N′-dm-1,3-pnH₂ = N,N′-dimethyl-1,3-propanediammonium, 1,4-bnH₂ = 1,4-butanediammonium, and mipaH = monoisopropylammonium) were synthesized by the base promoted cation exchange reaction and characterized by elemental analysis, infrared, Raman, UV-Vis and ¹H NMR spectroscopy as well as single crystal X-ray crystallography. The structures of 1–4 consist of [WS₄]²⁻ tetrahedra which are linked to the organic ammonium cations via N–H⋯S hydrogen bonding. The strength and number of the S⋯H interactions affect the W–S bond lengths as evidenced by distinct short and long W–S bonds. The IR spectra exhibit splitting of the W–S vibrations, which can be attributed to the distortion of the [WS₄]²⁻ tetrahedron. From a comparative study of several known tetrathiotungstates it is observed that a difference of more than 0.033 ? between the longest and shortest W–S bonds in a tetrathiotungstate will result in the splitting of the asymmetric stretching vibration of the W–S bond.     

An approach to computer-aided inhibitor design: Application to cathepsin L

Summary We have developed an approach to search for molecules that can be used as lead compounds in designing an inhibitor for a given proteolytic enzyme when the 3D structure of a homologous protein is known. This approach is based on taking the cast of the binding pocket of the protease and comparing its dimensions with that of the dimensions of small molecules. Herein the 3D structure of papain is used to model cathepsin L using the comparative modeling technique. The cast of the binding pocket is computed using the crystal structure of papain because the structures of papain and the model of cathepsin L are found to be similar at the binding site. The dimensions of the cast of the binding site of papain are used to screen for molecules from the Cambridge Structural Database (CSD) of small molecules. Twenty molecules out of the 80 000 small molecules in the CSD are found to have dimensions that are accommodated by the papain binding pocket. Visual comparison of the shapes of the cast and the 20 screened molecules resulted in identifying brevotoxin b, a toxin isolated from the red tide dinoflagellate Ptycho brevis (previously classified as Gymonodium breve), as the structure that best fits the binding pocket of papain. We tested the proteolytic activity of papain and cathepsin L in the presence of brevotoxin b and found inhibition of papain and cathepsin L with K_is of 25 M and 0.6 M, respectively. We also compare our method with a more elaborate method in the literature, by presenting our results on the computer search for inhibitors of the HIV-1 protease.     

Mathematical Models of Death Signaling Networks

This review provides an overview of the progress made by computational and systems biologists in characterizing different cell death regulatory mechanisms that constitute the cell death network. We define the cell death network as a comprehensive decision-making mechanism that controls multiple death execution molecular circuits. This network involves multiple feedback and feed-forward loops and crosstalk among different cell death-regulating pathways. While substantial progress has been made in characterizing individual cell death execution pathways, the cell death decision network is poorly defined and understood. Certainly, understanding the dynamic behavior of such complex regulatory mechanisms can be only achieved by applying mathematical modeling and system-oriented approaches. Here, we provide an overview of mathematical models that have been developed to characterize different cell death mechanisms and intend to identify future research directions in this field.     

Sulfonated rGO from waste dry cell graphite rod and its hybrid with PANI as electrode for supercapacitor

Journal of Solid State Electrochemistry - Development of high-performance energy storage devices is a vital research area to meet the present-day energy demand. In the work carried toward the...     

Stuffed Tridymite Structures: Synthesis,Structure, Second Harmonic Generation,Optical, and Multiferroic Properties

The stuffed tridymite structure Ba(Zn/Co)_1−xSi_1−xM_2xO₄ (M=Al³⁺ and Fe³⁺) is explored for the possible multiferroic behavior and to develop new inorganic colored materials. The compounds were synthesized by employing conventional solid-state chemistry methods in the temperature range 1100–1175 °C for 24 h. The powder X-ray diffraction (PXRD) and Rietveld refinement studies indicate that the compounds stabilize in the P63 space group (no. 173). The refinement results were also rationalized by employing Raman spectroscopic studies. The compounds were found to be second harmonic generation (SHG) active and show weak ferroelectric behavior. The co-substitution of Co²⁺ and Fe³⁺ in the structure gives rise to a weak ferromagnetic behavior to the compound, BaCo_0.75Si_0.75Fe_0.5O₄, making it a multiferroic material. The optical studies on the prepared compounds exhibited blue color (Co²⁺ in T_d geometry), purple color (Ni²⁺ in T_d geometry), and simultaneous substitution of Co²⁺ and Fe³⁺ gives rise to blue-green color owing to metal-to-metal charge transfer (MMCT) effect.     

Kinetics of carbon steel dissolution in ammonium chloride solution containing sodium thiosulfate

The dissolution behavior of carbon steel in ammonium chloride (NH₄Cl) solution containing sodium thiosulfate (Na₂S₂O₃) of various concentrations (0.01 and 0.1 M) was investigated using electrochemical impedance spectroscopy (EIS) and other nonelectrochemical techniques. The weight loss and polarization measurements indicate a significant increase in the NH₄Cl corrosion rate of carbon steel on addition of Na₂S₂O_3. The EIS measurements exhibited two capacitive loops at multiple direct current (dc) potentials for both the concentrations. Electrical equivalent circuit (EEC) and reaction mechanism analysis (RMA) were employed to analyze the impedance data. A four-step mechanism with two intermediate adsorbate species of same charge was proposed to explain the dissolution behavior of carbon steel in the given system. The surface coverage values enumerated that the surface was entirely covered with adsorbed species unlike in the pure NH₄Cl system. Charge transfer resistance and polarization resistance values estimated from RMA parameters indicate the increase in a dissolution rate with dc potential. The surface morphology was inspected via field emission scanning electron microscopy, and the corrosion products including surface state of carbon steel electrode were analyzed using energy dispersive X-ray spectroscopy and X-ray photoelectron spectroscopy.